psenen (psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557)


Basic Information

Item Value
gene id psenen
gene name psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20184067 ~ 20186861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258937.1
CGCCTGTCCCCGAAAACTCCGTTACCCATCATGCACCACAATGGAGTGACGTCACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCA

Function

symbol description
psenen Acts upstream of or within developmental pigmentation; melanocyte migration; and negative regulation of neuron apoptotic process. Predicted to be integral component of membrane. Predicted to be part of gamma-secretase complex. Is expressed in forebrain; hindbrain; midbrain; presumptive neural retina; and trunk. Human ortholog(s) of this gene implicated in hidradenitis suppurativa. Orthologous to human PSENEN (presenilin enhancer, gamma-secretase subunit).

NR:

description
PREDICTED: gamma-secretase subunit PEN-2

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06170 PSENEN, PEN2; presenilin enhancer 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258937.1 True 1013 mRNA 0.43 4 20184067 20186861

Neighbor

gene id symbol gene type direction distance location
igflr1 LOC107585721 coding upstream 34250 20146188 ~ 20149817 (+)
zbtb32 zbtb32,LOC107745206,LOC107585720,LOC107701562,LOC107740056,LOC107683047 coding upstream 42941 20126733 ~ 20141126 (+)
LOC122358429 LOC107704729,LOC107585716,LOC107585718,LOC107739789,LOC107585717,LOC107701556,LOC107683669 coding upstream 77499 20104530 ~ 20106568 (+)
LOC122358430 LOC107683669,LOC107701556,LOC107709782,LOC107585716,LOC107704729,LOC107739789,LOC107585718,LOC107585717,LOC107709781 coding upstream 81963 20100720 ~ 20102104 (+)
LOC122358428 LOC107683669,LOC107709782,LOC107701556,LOC107709781,LOC107739789,LOC107704729,LOC107585717,LOC107585716 coding upstream 88910 20093314 ~ 20095157 (+)
hspb6 hspb6,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 2053 20188914 ~ 20190769 (+)
lin37 lin37,LOC107745239,LOC107585799,LOC107675874,LOC107701558,LOC107747665 coding downstream 11379 20198240 ~ 20204220 (+)
LOC122358796 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding downstream 60317 20247178 ~ 20249733 (+)
LOC122358795 hspb6,LOC107571389,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 65131 20251992 ~ 20253736 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding downstream 74866 20261727 ~ 20267188 (+)
G108231 LOC107571392,LOC107701561,LOC107740055 non-coding upstream 41695 20141805 ~ 20142372 (+)
G108211 NA non-coding upstream 128173 19998614 ~ 20055894 (+)
G108217 NA non-coding upstream 167438 20014813 ~ 20016629 (+)
G108207 NA non-coding upstream 269624 19914149 ~ 19914443 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding upstream 448172 19731418 ~ 19735895 (+)
G108257 NA non-coding downstream 52506 20239367 ~ 20294956 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 110527 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 134020 20320881 ~ 20321946 (+)
LOC122359467 NA non-coding downstream 164736 20351597 ~ 20352384 (+)
LOC122359263 NA non-coding downstream 646633 20833494 ~ 20838578 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 409682 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1188076 18993345 ~ 18995991 (+)
G107777 NA other upstream 1340212 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1388085 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 1423570 18759582 ~ 18760497 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 2172 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 21309 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1024949 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1537543 21724404 ~ 21726266 (+)
G108571 NA other downstream 1545120 21731981 ~ 21733107 (+)

Expression


Co-expression Network