LOC122358796 (psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557)


Basic Information

Item Value
gene id LOC122358796
gene name psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20247178 ~ 20249733 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258685.1
CGCCTGTCCCCGAAAACTCCGTTACCCATCATGCACCACAATGGAGTGACGTCACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGAC

Function

symbol description
psenen Acts upstream of or within developmental pigmentation; melanocyte migration; and negative regulation of neuron apoptotic process. Predicted to be integral component of membrane. Predicted to be part of gamma-secretase complex. Is expressed in forebrain; hindbrain; midbrain; presumptive neural retina; and trunk. Human ortholog(s) of this gene implicated in hidradenitis suppurativa. Orthologous to human PSENEN (presenilin enhancer, gamma-secretase subunit).

NR:

description
PREDICTED: gamma-secretase subunit PEN-2

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06170 PSENEN, PEN2; presenilin enhancer 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258685.1 True 810 mRNA 0.46 4 20247178 20249733

Neighbor

gene id symbol gene type direction distance location
lin37 lin37,LOC107745239,LOC107585799,LOC107675874,LOC107701558,LOC107747665 coding upstream 42958 20198240 ~ 20204220 (+)
hspb6 hspb6,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding upstream 56409 20188914 ~ 20190769 (+)
psenen psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding upstream 60317 20184067 ~ 20186861 (+)
igflr1 LOC107585721 coding upstream 97361 20146188 ~ 20149817 (+)
zbtb32 zbtb32,LOC107745206,LOC107585720,LOC107701562,LOC107740056,LOC107683047 coding upstream 106052 20126733 ~ 20141126 (+)
LOC122358795 hspb6,LOC107571389,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 2259 20251992 ~ 20253736 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding downstream 11994 20261727 ~ 20267188 (+)
LOC122359506 NA coding downstream 67813 20317546 ~ 20334995 (+)
LOC122358440 NA coding downstream 87813 20337546 ~ 20346308 (+)
LOC122358498 LOC107735540 coding downstream 104096 20353829 ~ 20356625 (+)
G108240 NA non-coding upstream 13993 20170769 ~ 20233185 (+)
G108231 LOC107571392,LOC107701561,LOC107740055 non-coding upstream 104806 20141805 ~ 20142372 (+)
G108211 NA non-coding upstream 191284 19998614 ~ 20055894 (+)
G108217 NA non-coding upstream 230549 20014813 ~ 20016629 (+)
G108207 NA non-coding upstream 332735 19914149 ~ 19914443 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 47655 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 71148 20320881 ~ 20321946 (+)
LOC122359467 NA non-coding downstream 101864 20351597 ~ 20352384 (+)
LOC122359263 NA non-coding downstream 583761 20833494 ~ 20838578 (+)
G108394 NA non-coding downstream 598989 20848722 ~ 20849915 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 31699 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 472793 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1251187 18993345 ~ 18995991 (+)
G107777 NA other upstream 1403323 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1451196 18794080 ~ 18795982 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 962077 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1474671 21724404 ~ 21726266 (+)
G108571 NA other downstream 1482248 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 1485281 21735014 ~ 21735718 (+)
G108573 NA other downstream 1486947 21736680 ~ 21737687 (+)

Expression


Co-expression Network