LOC122358498 (LOC107735540)


Basic Information

Item Value
gene id LOC122358498
gene name LOC107735540
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20353829 ~ 20356625 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258314.1
aaaaaaaattatttaagtgGCATACCAGTGAAGTTCCCCAAACAGACATTTCAATTCTTAAGACAGCGCTAGGTCGCTTGCTGTCTGAATCAGGAATATGACTGGACATTTGttacttcatttaatttttcaagCTGTTCTGCTGTATGTTGCTTTGGGATGGGAAGTGAAAATGCCAAAGGAGATTCACGGTCTCAAAGGTTCCTGTCTGGTCATACCATGCGCTTTCAGCTACACATCAAACCCACCAACAAACCCAACTAGAGTTGTGTGGTATCAGTACGTCTCTAAAGGTTATCCTTTAGTTTATGATCCATGGTATCCAAATGATGTCATTAAGAAATTTAGAGGAAATACTGATTTATATGGAAACTCAAGTTGGGATTGCAGTCTGTTGATCAAAAACCTGGAATCATCTCATCATGGAGAGAAAATATACACATGGATTGACCCTGAAAATATTGGAAAGGGCACCTATGCTTTTTATGATGTCACTTGTACAATTCTAGTTGACGCCGTTCCACAGCAGCCCAGCATCGATATTTACGGAGGTGAAAGGACGGGTGACGCCATCACAGTAGTGTGTTCAACTTTCCACACGTGTCCACACAGGCAACCAACCATCACTCTGAACGGTATAGACGGATCTGATCAAATAGAGAACAAGCATTTTAAAGACGGCCTGTGGAAAACCACTCTGACACGCACAGGTGTCGTAAAGACAGAAAACTCGATCAATGAGTGTTCTGTATTGTACCATGGAGGCATAACAGTGACGgccacaaaagacaaaaatgcacaGTCCCCTGCCTACAAAGACGCAGACTCGATACACATTGGACTGAACACTATTGGGCTTTACATGCTAACTCCGACAATTGTATTTCTCCTCTCCTGCATAACCGCCGCTTTCATATACAAGAAACGCCACCGACAGCATCTCAATGATCTGCGAGAGTCAGTAACACCATTTGAAAATAGGAGATCGCATTGGAATAGATTTTCAAGGCACTTCAGTAGGTCTGAGGGAAGAGCAGGTTGGAGTAACGGGAAAAACAGGACTGAAATCAGTGACAAAAAACaagagacagaaaacaagccTTTCTCCAAACCTTTTATGCCATCACCAAAGAGTGAGCCAAAGTCCTTCTCGGATCATGATTCTGAAGCTGAATACACCAACATGGGTGAACTCAACATGTATGGAAACATCTGATGATAATGAACAGCACAAAGTTCAACTGTGTcgaatgctaaaaataaataaatactgtacatcaCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107735540, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258314.1 True 1282 mRNA 0.42 10 20353829 20356625

Neighbor

gene id symbol gene type direction distance location
LOC122358440 NA coding upstream 7521 20337546 ~ 20346308 (+)
LOC122359506 NA coding upstream 18834 20317546 ~ 20334995 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding upstream 86641 20261727 ~ 20267188 (+)
LOC122358795 hspb6,LOC107571389,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding upstream 100093 20251992 ~ 20253736 (+)
LOC122358796 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding upstream 104096 20247178 ~ 20249733 (+)
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding downstream 49085 20405710 ~ 20438826 (+)
LOC122358393 sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521 coding downstream 82570 20439195 ~ 20448086 (+)
robo2 robo2,LOC107741616,LOC107745189 coding downstream 104519 20461144 ~ 20827915 (+)
cab39 cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174 coding downstream 836426 21193051 ~ 21201218 (+)
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding downstream 846224 21202849 ~ 21210105 (+)
LOC122359467 NA non-coding upstream 1445 20351597 ~ 20352384 (+)
G108337 NA non-coding upstream 31883 20320881 ~ 20321946 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding upstream 51620 20297388 ~ 20302209 (+)
G108257 NA non-coding upstream 58873 20239367 ~ 20294956 (+)
G108240 NA non-coding upstream 120644 20170769 ~ 20233185 (+)
LOC122359263 NA non-coding downstream 476869 20833494 ~ 20838578 (+)
G108394 NA non-coding downstream 492097 20848722 ~ 20849915 (+)
G108418 LOC107086176 non-coding downstream 715456 21072081 ~ 21190373 (+)
G108427 NA non-coding downstream 844762 21201387 ~ 21202509 (+)
G108553 NA non-coding downstream 1260031 21616656 ~ 21617193 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 99558 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 103857 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 138350 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 579444 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1357838 18993345 ~ 18995991 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 855185 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1367779 21724404 ~ 21726266 (+)
G108571 NA other downstream 1375356 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 1378389 21735014 ~ 21735718 (+)
G108573 NA other downstream 1380055 21736680 ~ 21737687 (+)

Expression


Co-expression Network