cab39 (cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174)


Basic Information

Item Value
gene id cab39
gene name cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21193051 ~ 21201218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259855.1
GGAAGTCCTCGCTGCTgttcttgcacacacacacacacacacacgtacggtTATCCGCACAAAACAGGCTaagaaagcacacacacaaacaaacattatatttcAGGACGTACACCGCGGTTCTTTAGAAAAGGCCGAAGGAGACCCAAACAAGgtggGCTCACTGCTACCCGTGTGCCCTGGTAACGTGTTGCCATGCCCTTCCCTTTCGGTAAGTCTCACAAGTGTCCAGCGGACATTGTGAAGAATCTAAAAGACAACATGACCATCCTGGAGAAGCAGGACATTTCAGACAAGAAGGCTGAGAAGGCCTCTGAAGAGGTGTCCAAATCTCTGCTGGCCATGAAGGAGATTCTCTATGGCACGAATGAAAAGGAGCCACAGACGGAAGCCGTGGCTCAGCTCGCTCAGGAGCTCTACAACAGCGGTCTGCTCAGCACCCTCGTCGCAGATCTGCAGCTCATCGACTTTGAGGGTAAGAAAGATGTGGCACAGATCTTTAATAATATTCTGAGACGTCAGATCGGCACACGGACACCTACCGTTGAATACCTGTGCACTCAACAAAATATACTCTTCATGCTGCTTAAAGGTTACGAGTCTCCAGATATCGCTCTGAACTGTGGGATCATGCTGAGGGAATGCATACGGCACGAGCCTCTGGCCAAGATCACCCTCTGCTCCGAGCAATTCTACGATTTCTTCAGATACGTGGAGATGTCCACCTTCGACATCGCCTCGGATGCATTTGCCACTTTTAAAGATTTGCTGACGAGACACAAACTGCTCAGCGCTGAGTTTCTGGAGCAGCACTACGACCGATTCTTTAGTGAATATGAGAAACTTCTTCACTCAGAAAACTATGTGACTAAGAGGCAATCGCTAAAGCTTTTGGGAGAGCTGCTTTTGGACAGGCACAACTTCACTATAATGACAAAGTACATAAGCAAACCAGAGAACCTCAAACTCATGATGAACCTACTGAGAGACAAGAGCCGCAACATCCAGTTTGAGGCCTTTCATGTATTTAAGGTGTTTGTGGCCAATCCGAACAAGACCCAGCCCATCCTCGACATCCTGCTGAAGAACCAGACCAAACTAATCGAGTTCCTCAGCAAGTTCCAGAACGACCGCACCGAGGACGAGCAGTTCAGCGACGAGAAGACCTATCTCATCAAACAGATCCGGGACCTCAGGAGGCCAGCTCCGCAGGACGCTTGAGAAGGCTCACGAATGTATACGAATGCACAGAAGGACGTCTAGACAGCGTTTTAGGCAGCGTCTGGACGATGTTTGGCTCTCTGGGACGTTGAGTGGCCGCAGCGCTgggcatgtttttgtgttttgcaggaACCGTTCAATGCCGTTTGAGCTCGGTGAGAGCGAGAAATATGACGACGAGGATGAAAAGTAGTCTTGCTTCGCTGGACATTCAACCTCTCCCCCTACAATGTTTTATTCTCATGTTTCAAAAAACGagcaaaatgaacagaaaagacGGATGTAGATGCTGCTGCTTTATTGCACATAAAGGAGGAGGGATTTGTACctcatacacaaacatacactcaAATGTCTGTTGATGCTAATTGGATATTAATGAATTCCAGAAAGCACTTAAACGCACTCCTGTCAGCTCTTTTGCTCATTGTCAGCTAGGTGAAAAACTGCAAATGTGACGCATAAATCTGATCATGCTTTGCACATTTTGCTTCTTGTGGGTGAGTGAACTTGTACATAGGCTTTTTCATCTTTATGGTCGCTATCAGATTCATTTTCAGAGGCGGAAATGGGTAAACGTGTTGACTGAGGATGGTTAAGTGGAGTTGTGGCTGTGATGTTGATCTTGATCTTGATTTAACAATGTCATTCTACTCTCATGATTAGTCACTGCAGAGTGGGTGTAATGGAAAGTTGACCTACCTGCTTTCTGTGATTGTGACCTTAAGATCTGTGCTCAGACactgcttatttttaatttgctagTTTCAGTATAGCTAACCCCATTACTCATACCTTTTAGCCTGTATGTTAAATTGTCCCCAGTTTGGATAATTGGATGAGTTAATGGGTTAAATCTCACAAAGAAACTTGTCTAGGTCACATTTCAGCCCAAAATccaaagaaaaatctattttagGACAACATTTCCCaacattctgaatcatttgtgtttaaataagtgtgtgtgtgagtgtgtgtatatatatatatatatat

Function

symbol description
cab39 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CAB39 (calcium binding protein 39).

NR:

description
calcium-binding protein 39

GO:

id name namespace
GO:0030295 protein kinase activator activity molecular_function

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259855.1 True 2220 mRNA 0.45 9 21193051 21201218

Neighbor

gene id symbol gene type direction distance location
robo2 robo2,LOC107741616,LOC107745189 coding upstream 365136 20461144 ~ 20827915 (+)
LOC122358393 sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521 coding upstream 744965 20439195 ~ 20448086 (+)
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding upstream 754225 20405710 ~ 20438826 (+)
LOC122358498 LOC107735540 coding upstream 836426 20353829 ~ 20356625 (+)
LOC122358440 NA coding upstream 846743 20337546 ~ 20346308 (+)
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding downstream 1631 21202849 ~ 21210105 (+)
ngef ngef,LOC107585734,LOC107745214 coding downstream 24934 21226152 ~ 21251420 (+)
trnai-aau_69 NA coding downstream 51524 21252742 ~ 21252815 (+)
trnaw-cca_2 NA coding downstream 52259 21253477 ~ 21253548 (+)
trnag-ucc_4 NA coding downstream 53716 21254934 ~ 21255005 (+)
G108418 LOC107086176 non-coding upstream 2678 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 343136 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 354473 20833494 ~ 20838578 (+)
LOC122359467 NA non-coding upstream 840667 20351597 ~ 20352384 (+)
G108337 NA non-coding upstream 871105 20320881 ~ 20321946 (+)
G108427 NA non-coding downstream 169 21201387 ~ 21202509 (+)
G108553 NA non-coding downstream 415438 21616656 ~ 21617193 (+)
G108555 NA non-coding downstream 430111 21631329 ~ 21908852 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding downstream 432983 21634201 ~ 21911355 (+)
G108561 NA non-coding downstream 441365 21642583 ~ 21920410 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 938780 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 943079 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 977572 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1418666 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 2197060 18993345 ~ 18995991 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 10592 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 523186 21724404 ~ 21726266 (+)
G108571 NA other downstream 530763 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 533796 21735014 ~ 21735718 (+)
G108573 NA other downstream 535462 21736680 ~ 21737687 (+)

Expression


Co-expression Network