col4a3 (LOC107586745,LOC107704742,LOC107739767,LOC107683429)


Basic Information

Item Value
gene id col4a3
gene name LOC107586745,LOC107704742,LOC107739767,LOC107683429
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19550700 ~ 19578860 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259002.1
CAGAAACTGACAAACACACTTCCTCGAACCCCAGGAGATTTGATATTCTTGAGGATTCATTGACAGCAGGGAAGGGgggggtgaaaaaaaaagtttgaatcgGTTTCCTGAGCGGCgagtaaagttttatttatgagATGGTCGAGGTGCCGCAGGTGGCCTTCGTTTGAGCTAGTGACCGGTGGGAATTGCGCGCGCGGGTCCGGTGCGGATGAGAAGATGGATTCTTGCCTGATATCGCGAGCGACGCTTTTGGGAATGATGTTCCTGGCGCTTCTTACCCCGGCACAAGCTAAAGAGGGCTGTTTTTGCAGTGAGAAATCAGGATGCAACTGTCAAGGACTCAAAGGACAAAAGGGTGTGATGGGCTTTCCTGGTTTGTCTGGTATAAAAGGAATTCAGGGGTATCAAGGAAATGAAGGCCCTCCAGGACTTCCTGGTGAAAAAggAAATATTGGATTTCCAGGCATACCAGGACCTAAAGGTTCTAGGGGAGTTTCAGGGACACCAGGAATCTCTGGCCAACCAGGACTACCGGGGTTCCCTGGAAATGAGGGGCCGAGAGGGCCTAATGGTCTCCCAGGATGCAATGGAGCAAAGGGTGAGCATGGTGCGCCAGGCTTTATAGGGCAGATGGGAGCTCCTGGGAAGCAGggAATACCAGGAATCCAAGGAGCTaagGGAGATAGCTGTTACTTGCCACCCTCTGGACAAGTGAAAGGACGTTGTGGTTTTCCAGGCAGAGATGGAGATAAAGGGTCATTGGGATCGCCAGGGTCACCGGGATTATTTGGACCAGATGGGCCCAGAGGTTCTCCAGGAATAGGCGGCATACCTGGACCACAAGGAGAGAAGGGTCTAGAGGGTCGAAGCATGGTAATACCTGGACCCATAGGTCAAAAGGGGCAGAGGGGACCATCTGGTATACCTGGACAAAAAGGTGTAAAGTTATTTGTAACAGGACCAAAGGAGCCTAAGGGTGACAGTGGGGATGCTGGAGACATTGGATGTCTTGGCCCAATTGGTTTACGTGGTCGTTCTGGTCCTAAGGGGAAGAAAGGGGAAACTGGGGAGCCCGGGGGTctgGGTAAACTTGGAAAGGATGGGCTGATAGGAGAGTCTGGCCGTACGGGAATTCCTGGAGACCAAGGATATCCAGGAGTTATTGGAATAGCAGGGGAGGAgGGTCTAAAGGGTAACAGTGGTGCCCCTGGTATCCCTGGAGAGttcATTGTAATAGATAACAGGATCAAAGGTCTAAAAGGTTTTCGTGGGCTTCCTGGACCTCCTGGTCTACGAGGTAGTGAAGGTTTTATCGGACTTCCTGGATATGCGGGTCCTCCAGGGGCCAGCATACCAGGACCTACTGGAAAACCAGGTCCCCCAGGATTTAGAGGTATAAAAGGGGAAAGAGGAGATCCTGTTCCTAACAGCACAGGACCCAGAGGGCAAGATGGATCACCAGGGGAACGAGGACCCCCTGGTGACCCCGGACCTCCAGGAATTCCAGAAGTCAACACCCTTTGGGGACCAAAAGGGTTAAAGGGCGAGAGAGGCCTAACAGGCCCTCAGGGTCTGCGTGGAGATCCTGGCATACAAGGTGAGCAAGGAGAACTTTGCAGGCTGTGTGCTGCTTCTGTTTCTGAACCTGGACCTCCAGGACAATGTGGAGATTCAGGCAGCCCCGGAGAGCCAGGTATTGGAGGATATCCAGGCCATAAAGGATGTCAAGGATTCAAAGGTTCAGATGGTCCACCTGGTCCTCCGGGTAACTTAGGTCTTCCAGGGTATCCAGGCCTACCAGGGCCCACAGGAGACCATGAAATGAGGCATGTGCTTGGGGAGAAAGGCAAGCAAGGAAACTGTGGTGCAGAAGGACTACTGGGGATAAATGGGAAAGATGGCCGGCCAGGCAACCCTGGCTTCAAAGGACCACTAGGAGCAAAAGGAATTCCAAGTCCTCCAGGCCCTAAAGGCAACCAAGGAAATCCAGGAAACTGTGGGGATCCTGGCTGCCCAGGTCCAATGGGCAGCCAAGGGTCAATGGGTGTTGGGAGACCAGGGGTACCTGGAGAAAAAGGATGTATGGGAGAAGTTGGCCGGCAAGGAAATACTGGAGAACCAgGTGAAAAAGGATCTCCAGGGCCAGTACAAAGGACAGCAGGAGACCCAGGTGATCCTGGACTGCCTGGTCCACCTGGTCAACGAGGACCTCCAGgtAATGATGGTTGTGTAGGACCTCAAGGATTACCAGGATGCATTGGGttaaaaggagaaaaaggaCAGTCAATGCCAGGAGCTCCTGGATTAACTGGTCCTAAAGGTGATAAGGGTGTGAAAGGTAAACAAGGTCTGCCTGGTTATGGAAGTGTAGGCCGTCCTGGACCCCCAGGACCACCAGGAAATCCAGGTCCAAAGGGTGAAATAACGTTTGGCTCCCCAGGGCCCATGGGTCGGCAGGGCTTGCCAGGAGATGAAGGAAACCTTGGGCTACCAGGAAATTGTGGCCCTCCTGGATTATCAGGATGCTCAGGtcaaagaggaagagaaggacCAACAGGAGAAAGTGGTGTGCGGGGTCTTGATGGTTTGCCTGGAATAGCTGGTGTACCTGGAAGCTGTATTCCTGGAGCCAAAGGCGATGAAGGGTCCTTTGGCATTAGAGGGCTAGATGGACCTAATgGGCTACCAGGGCTGAAAGGGCCACAAGGTGAAACTGGACCACCTGGACAGGGTGTACCTGGTATAACGGGTGAGATTGGAATACCTGGAAAAATTGGAGATGCAGGGTGGATTGGGATCCGGGGACCGAAAGGGTTTCAAGGAAGGGATGGTTCACCAGGCTTTCCAGgtACACGGGGAGATCAAGGAAATCCTGGAATTACTGGTCCACCTGGTGTAGATGGAAATCCTGGACCACGGGGATTCCAGGGACCCAAAGGTTTAATGGGAAGGAATGGACTACCAGGTGATGTAGGAAAACCTGGGAATCCTGGAGACCAGGGGGTCTGTGGTCTCAAGGGACCACCAACAAATGTTATGAATCCAGGGGATCCCGGTGACCCTGGCCTACCAGGTCTTCTTGGTCTACCTGGCGCTAAAGGGGAATTAGGACTTCCAGGCAATTATGGACGATGTGGGAAGAATGGAGTTCCAGGCAGACCTGGTCCACCAGGCCCTCCTGGTGATGCTGGCCAGAATGGACTTCCTGGAAATCGGGGTCCTGATGGATACTTTGGGGATCCAGGAGTTATGGGGTTTCCAGGAATAAAAGGCCTAAAAGGTTTACCCGGTGTTCGTGGAGAGACTGGGATTCCTGGTGTCCCAGGACCAAATGGACCAAAGGGGATCAAAGGTGAACCCAGCCCCTTTGCACCAGGGCCTCGAGGACAATGTGGTGAAAAAGGTGAGCCAGGCTTTCCAGGGCTTAGAGGGGAAAAAGGTGACAAGGGTATATGTGGGACATGCGGGCCATCAGGTTTATCAGGGGCTCCTGGTGAAAGAGGCGAACCTGGAGTACCAGGAGTTCCagGACCTCCTGGAGGTCAGGGTGATGAAGGTTTCAATGGGTTTCCAGGTCCACCTGGATATGAAGGGCCCTGTGGTCCACCAGGTGTTCCTGGTTCAGCTGGAGATCCTGGGCCTCCAGGACTTCGTGGAGACCAAGGCAAGGATGGCTTTCCCGGACCAGCAGGGGATAAAGGAGACAGAGGGCcccCAGCAATTGGAAATCCTGGCCTATCTGGCATCAAGGGTGAGAAAGGTACTAAAGGCAGTTCTGGACCCCTTGGGCCATGTGGACCTCCAGGACCCTGTGGTCCAGCTGGAGATATTGGTCCTCTGGGCCAACTTGGGGAAATGGGGCCACGCGGGTTTCCAGGTCCACCTGGTGCCTGTATCAGTGGTCCAAAAGGGGAGCAAGGACCTAATGGATCACCTGGCCTACAAGGACTCAGAGGACCACGTGGGCCTGCTGGCGAACCAGGTCCAGGCATAAAGGGAGATAAAGGCAACATTGGGCTCAAGGGGCTTTTGGGATTACCTGGCTGTGTTGGTGACCGGGGAGCTCCAGGGTTGCAAGGTAAAGATGGAAATCCTGGTTTCAAGGGACCAAAAGGAAATAAGGGGCCTTTGGGTTCTACTGGGCCACTCGgcCAAAAAGGACAATGTGGTCCAATTGGGTCTCCTGGATTGAAAGGTTGTAAAGGAACTCGTGGAACTAAAGgCACTAAAGGGTGTGATGTTGTGGGTCAGATCATAACTCTCCCAGGAAACCCTGGTTTCCCTGGACAAGGCGGCGTAAAAGGAAATGTAGGAGAACAAGGACCTCAAGGGCTACAAGGTCCTCAAGGAGCACAAGGTCAAAAAGGAAGCAGAGGTGCAGATGGAGGTGCTGGACAAATGGGGAAATCTGGACCAAGGGGGAAAACTGGCCCAAAAGGAACAAAAGGTTTTCCCGGTTTGTCAGGTGAAATGGGTCCCAAGGGTTCACAAGGTCCACCTGGCCCTTCTAAAGATGGATTCCTTTTTACCAAGCACAGTCAGAAAACATCAGTACCAACCTGTCCTCCTGGGTCAAAACATTTGTACTCTGGATATTCGCTTCTCTTCATCAACGGCAATAACCGTGGACATGGACAAGACCTAGgaACTGTGGGAAGCTGTTTGCAAATGTTCTCCACCATGCCTTTTCTGGTGTGTAATCCCAATGAGACGTGTTACTATGCCTTTCGAAATGATTACTCCTATTGGCTGTCTACAGACACACCGATATCTTCCGACATGGAACTGTTATCTGGTAGACTGTTGGCAAATTATATCAGCAGGTGTTCAGTGTGTGAGGCACCAACTAATGTGATAGCAGTTCACAGCCAGACCATGGAAATCCCAGAGTGCCCAAGAGGATGGCTTCCACTATGGAAAGGTTACTCCTTTGTAATGCAAACGGGTGCAGGCGCAGAGGGATCCGGGCAGCCGCTTATTTCTCCTGGATCCTGTCTGGAAGAATTCCTGAAGATTCCATTCATAGAATGTCACGGTCGTGGCACCTGCAACTTCTATCCTGATTCCTTCAGCTTCTGGCTTGCATCACTTGATCCTAGCAGAATGTTCAGTACTCCAATCCACCAGACAACAAGACAGCAAGATATCAGCCGCTGTCGGGTCTGTATGAAGCAGTAGTTTTTAAGTCAGAGGTGCCTTGGTAAAAGACTTGAACTATGGACTTCAATTCGTGGGTTTTTCATGGGTTGTGTAATGTCAGTAGGATCCGTGAAGTCAGCCCTCAAGTGCTTCACCTGAAACAACTGGATATTTTGTTCTCCCATATGAGTGATTGTCATTATGTGGTCCAGTCCAGGAACAGTTCACTCAGGttcgtattttggttttggaaatCCCAAACCACAGGATGGCATGCATGCGAgatcaaaaaaacactttcattttcttataatacgcatttattttgttcaaacccctcctttgcatGAGGCCTATCTGCTTTGATAGGTCGATTtcttttaaagcagtgtttgtgagcttttaaagctccaaaagcggcacctagtggcaaagaataaattagcattttcattcataccAACGTGAAAATCAAGTTTTCCCAGCTCTGCGtgcaacaagtgggcgggcaatatgctaatttttcactttgaaacacaacatgaaacggctcgtttcagtgattcagagtcgactctttcttttgagaaaaaataactttatacacagtgcactttcagatttaaaactttgcaggatgttttcattcacttacaggatgttttcattacacactgcattaacggtcattttcaaaaatccataaaaggGGCACTTTAAGTTCTTTGTTTTGGATTTGCTAAATCCAACGTACCAGCCCAGTGTTTTTCACTTCCAAGTATTATTCAGGattcttttctttgtctttgacATGTCCAGaacatataaatgtgtgtttctctctaaATGACTCATAATAGATTTTGGGGTGACTTTAGTTCAGATACTTCTCATTACTAAACTATTTTCATTTGTAGTTAATCATTAATGACTTTTGTGTGTGGGAATGGCAGTAGTAGGCTATTAATAAATTCTGAGCATTGAGAAACAGgctcattaaataataatttgagcgCAGATTGCTCATATTGAGCATAAACTGTAGAATTTGGTATTTAAAACGGAAACAAAATAGTTCATCTACACTCTAGTAATGCTACTGAAAAATAGtttagtaattaaattaaaaatatcttgtttatttttgtcataattaattgttaactAATACACTTGACGCTGTCTATAGTAATGCTgtataaacaaatgttaatgttactaatttaataatcaagtacaaataaatagcataaagTGTTCTGAATTCccaaatttatttgaatataaaccCTTCAAGTAATTCcgtaaatatcataaaataaaattcagtagTTCTCTGCttatgtattttgaatgtgTGTGCAATTGTGCTTGTCATTTGGACTATGATTTTTTGCTTtagtatacatattttattataggtCTGCTTGCTGTTAGGACTTTACTCTTGTTTCGTAGTGTATAAAACTGTTCGTACAAAGTAGTTTTTGGTGTTGAGGTTTTGCAAAGTAAATTTAAGCTTGTTCATATTTACCACTGAATGACTCAGAGTTAATGGTGCTATGTGCTAGATTATGAATAAGGAAAAGAAACTTGAGAAACAATGTGAGAGACaacgtgtgtttatgtgtagtcATTATGTGAATTTACCAGACACTTATTATTATAGCATTGCATTAAGGAGCTTTCCTCATGACTCATGTCCGGTTGCAATCAATAGTATACAGGAATAGTGATGAAATATTACACATGCAATCTTGGCAACATGAAATCAAGACTATTGAAATTAGGAGTGCAGTCTTGACAACACTTCCTCTACAGaggaaatgaaaatgtcatcaTTGTGTCATTACCTGCTTTATCAAAGATCTATTGCACTCAGTTAGGTGTATATTTCTGCTCCTCTTTCGTACTAAACAACATAAAGCAAGTGTGATTCATGTGTCCATGTGACCCACAAATGATGTGTTTTATGCTTTCATAACTAAAATCAGAATTGCACGTTTAGTATAGAAGTTAATGGTATCTTTATTGACTGCAGTGTTTAATAGCTTAAGAACTGCATAGCAAATAATGGTTTtgtcagaataataaaaaaactgtgtatattttaaatatttctgtagaAAATGTCTATAAGATCCCAATAACATCTCAGTTCTGttatatacagatttttttatactCCATAAGACCGTAAATAAAGACTATTGTGTTTGGATGTGTAGTAACATTGCactaattgaataaattaatctTTTGGATGAAACCAA

Function

NR:

description
collagen alpha-5(IV) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259002.1 True 7415 mRNA 0.47 52 19550700 19578860

Neighbor

gene id symbol gene type direction distance location
rhbdd1 rhbdd1,LOC107683388,LOC107582224 coding upstream 36218 19510346 ~ 19514482 (+)
nyap2a nyap2,nyap2a,LOC107704744,LOC107730860,LOC107683386,LOC107751997 coding upstream 81279 19434054 ~ 19469421 (+)
trnav-aac_27 NA coding upstream 125511 19425117 ~ 19425189 (+)
megf6 zgc:158328,LOC107752003,LOC107704746,LOC107587807 coding upstream 279792 19230638 ~ 19270908 (+)
slc19a3a slc19a3a,LOC107704692,LOC107587814,LOC107752583,LOC107683425 coding upstream 358209 19186942 ~ 19192491 (+)
sst1.2 sst1.2,LOC107739785,LOC107704710,LOC107683457,LOC107721144,LOC107582289 coding downstream 1679 19580539 ~ 19582015 (+)
sst1.1 LOC107586749,LOC107582287,LOC106579799,LOC107704709,LOC107683458,LOC107721142 coding downstream 16145 19595005 ~ 19596303 (+)
masp1 LOC107586740,LOC107704738,LOC107739768,LOC107721148,LOC107683390,LOC107582221 coding downstream 28304 19607164 ~ 19617602 (+)
gmnc gmnc,LOC107704691,LOC107683460,LOC107739787,LOC107721147,LOC107587788 coding downstream 66649 19645509 ~ 19649706 (+)
kirrel3l kirrel3l,LOC107704734,LOC107739776,LOC107585713,LOC107755386,LOC107582216,LOC107694809 coding downstream 377128 19955988 ~ 19997163 (+)
G108055 NA non-coding upstream 14853 19488226 ~ 19535847 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding upstream 33226 19514981 ~ 19517474 (+)
G108011 LOC107752015,LOC107683384,LOC107582227,LOC107586802 non-coding upstream 323318 19222740 ~ 19227382 (+)
G107996 NA non-coding upstream 329648 19171887 ~ 19221052 (+)
G107999 mrpl44 non-coding upstream 332603 19216881 ~ 19218097 (+)
G108124 NA non-coding downstream 110303 19689163 ~ 19689951 (+)
G108154 LOC107694807,LOC107755381,LOC107582218,LOC107739770,LOC107704708,LOC107585797 non-coding downstream 151879 19730739 ~ 19735234 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding downstream 152558 19731418 ~ 19735895 (+)
G108207 NA non-coding downstream 335289 19914149 ~ 19914443 (+)
G108211 NA non-coding downstream 419754 19998614 ~ 20055894 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 554709 18993345 ~ 18995991 (+)
G107777 NA other upstream 706845 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 754718 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 790203 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 791864 18756343 ~ 18758836 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 142424 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 605260 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 610173 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 629310 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1632950 21211810 ~ 21214493 (+)

Expression


Co-expression Network