LOC122360777


Basic Information

Item Value
gene id LOC122360777
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18163340 ~ 18195168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168370
GTTTACCTGGAGCGTGAGTTCACGACGAGCGCGCGGTTGACCGTTACCCGGAAGCGATGCTTTATTGTGtaaaaagtttaatataatAGTGTTTTTCCAGACACCTTATAGTTTCGCTTCAAAAACGGATTCATCAACTGCGGTCGTGTGGATAAGAGCTGTTTGTTTTGCGTGCTTTTAAGCGTCGACGTGGAGAACCCTTCTacgtataataataaataaagctcaGAAAATAAAGCCGGAGATGGATTATTTTTCTACAAGTCTCATCTAGGTCTCAACGAGGGTGTCCGGTATATCCAGGCAGACACAGACAATCTCCTGTTATGTGATGACAGGAGGAGGCATGTACACATGATGGGCATTGACGGCTACACCTCTCTCCAAACAGACCAGCACTACACACTACATAGAAGAGAAGAAAGCACTGTTTAAACCAGTTCTACTGTGACCTGAGCTCTCAGAGACGCTGATGGATGCACAGTACTGGATGTCCTGGGTATAGTAAAGCTGTCCCACACAGGAATTTACCTTAAGAGGCCCATTTATTTATGAGACAGAATAACAAACATTTGGATCAGGACGAGGTGGCTGCTGTGCCTGTGCGGACAGATGGACAAACTGC
>XR_006252837.1
GGCATTGACGGCTACACCTCTCTCCAAACAGACCAGCACTACACACTACATAGAAGAGAAGAAAGCACTGTTTAAACCAGTTCTACTGTGACCTGAGCTCTCAGAGACGCTGATGGATGCACAGTACTGGATGTCCTGGGTATAGTAAAGCTGTCCCACACAGGAATTTACCTTAAGAGGCCCATTTATTTATGAGACAGAATAACAAACATTTGGATCAGGACGAGGTGGCTGCTGTGCCTGTGCGGACAGATGGACAAACTGCAACAGagATTTGGATCAGGCCTGGATCTATTCAAGCGAGTGTGACATACAACACTGAGCCTCCCCTAAGTGCAAAGAGGAGTGCAGCATTCAGAAAAGGCATTAGGACTGAATCCAGAGGAAGTCAATCCGCTGCCAGTACATTCTTCCTAAAGCTTTCTGATTTACTCAACTGGCCATCGCTGCAGAGCCCTTCTGGAGAGCGAGGAGGAAGCCTGCTCCTTATTAAAACCTTCTTTTTATCGCCTTTTTACAGCTGAAAAAATAACCAGATGTTTCTGAATTTGAGCATTTGCAAGTAAAGAGGTTTTCACCAGAAGAAAAGAAACGCATCACTCTCTGTCTGCCCTGAAGGTGACTCCGTGGAAATGCTTCtattctcttcctcctctcacTCTCGTCACAACAAAGACTATAGTTTAACCCCAAAAGAGAGGATTCTTAAATGgtaaagatttaaaatttaagttGATTTTAGTTGATTGAAATTactgaaattttattacaacgttttaatttagtatttagtatataATTTAGTTGACTGCTTTGATCtctgaagctgaattttcagcagtcatcaCTTTTGTGtcacaaaaaaatagaaattctatgctgcatttatttattatcatttattatcaatgttgtgctacttaatatttaCGTGGGGACTGTgatgttttaaagttttgttttatgaatttaaagaaaataaagaactGTAATTTATTA
>XR_006252838.1
GGCATTGACGGCTACACCTCTCTCCAAACAGACCAGCACTACACACTACATAGAAGAGAAGAAAGCACTGTTTAAACCAGTTCTACTGTGACCTGAGCTCTCAGAGACGCTGATGGATGCACAGTACTGGATGTCCTGGGTATAGTAAAGCTGTCCCACACAGGAATTTACCTTAAGAGGCCCATTTATTTATGAGACAGAATAACAAACATTTGGATCAGGACGAGGTGGCTGCTGTGCCTGTGCGGACAGATGGACAAACTGCAACAGagATTTGGATCAGGCCTGGATCTATTCAAGCGAGTGTGACATACAACACTGAGCCTCCCCTAAGTGCAAAGAGGAGTGCAGCATTCAGAAAAGGCATTAGGACTGAATCCAGGTGCGTGATGAAACAAAAGCCTTCATGGTTTTGCAGCAAAATATCTTTTCAAAGCAAcgAGGAAGTCAATCCGCTGCCAGTACATTCTTCCTAAAGCTTTCTGATTTACTCAACTGGCCATCGCTGCAGAGCCCTTCTGGAGAGCGAGGAGGAAGCCTGCTCCTTATTAAAACCTTCTTTTTATCGCCTTTTTACAGCTGAAAAAATAACCAGATGTTTCTGAATTTGAGCATTTGCAAGTAAAGAGGTTTTCACCAGAAGAAAAGAAACGCATCACTCTCTGTCTGCCCTGAAGGTGACTCCGTGGAAATGCTTCtattctcttcctcctctcacTCTCGTCACAACAAAGACTATAGTTTAACCCCAAAAGAGAGGATTCTTAAATGgtaaagatttaaaatttaagttGATTTTAGTTGATTGAAATTactgaaattttattacaacgttttaatttagtatttagtatataATTTAGTTGACTGCTTTGATCtctgaagctgaattttcagcagtcatcaCTTTTGTGtcacaaaaaaatagaaattctatgctgcatttatttattatcatttattatcaatgttgtgctacttaatatttaCGTGGGGACTGTgatgttttaaagttttgttttatgaatttaaagaaaataaagaactGTAATTTATTA

Function

GO:

id name namespace
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168370 False 625 lncRNA 0.45 3 18164406 18195168
XR_006252837.1 False 999 lncRNA 0.39 4 18163340 18189601
XR_006252838.1 True 1058 lncRNA 0.39 4 18163340 18189601

Neighbor

gene id symbol gene type direction distance location
pdia7 zgc:77086,LOC107704886,LOC107741739,LOC107587817,LOC107597998,LOC107671642 coding downstream 5970 18152668 ~ 18157370 (-)
cct3 cct3,LOC107741740,LOC107704884,LOC107732470,LOC107587818,LOC107671634,LOC107597996 coding downstream 11403 18145826 ~ 18151937 (-)
tnfaip8l2b tnfaip8l2b,LOC107741744,LOC107587822,LOC107689840,LOC107663392,LOC107597992,LOC106605333,LOC107741773,LOC107587875,LOC107689897,LOC108262134,LOC108441933,LOC107598015,LOC107732462 coding downstream 262653 17883651 ~ 17900687 (-)
scnm1 scnm1,LOC107689842,LOC107741746,LOC107663374,LOC107732480,LOC107597991 coding downstream 284327 17876599 ~ 17879013 (-)
hormad1 hormad1,LOC107587829,LOC107598012,LOC107663340 coding downstream 322785 17837135 ~ 17840555 (-)
mc5rb mc5rb,LOC107704891,LOC107741731,LOC107587811,LOC107598022 coding upstream 27409 18222577 ~ 18228349 (-)
ldlrad4b ldlrad4b,LOC107598001,LOC107587810,LOC107741730,LOC107723105 coding upstream 45070 18240238 ~ 18255164 (-)
ptk2ab ptk2ab,LOC107704895,LOC107552863,LOC107741772,LOC107587873 coding upstream 89820 18284988 ~ 18339610 (-)
dennd3b LOC107587809,LOC107704897,LOC107741729,LOC107672133,LOC107552815 coding upstream 146123 18341291 ~ 18354097 (-)
gpr20 LOC107741727,LOC107587806,LOC107704849,LOC107723110,LOC108436547,LOC103031715,LOC108263002 coding upstream 173176 18368344 ~ 18372917 (-)
G114035 NA non-coding downstream 47458 18095740 ~ 18115882 (-)
G114034 NA non-coding downstream 71274 18090687 ~ 18092066 (-)
G113926 NA non-coding downstream 208397 17954603 ~ 17954943 (-)
G113922 NA non-coding downstream 251199 17911910 ~ 17912141 (-)
G113920 NA non-coding downstream 261647 17901476 ~ 17901693 (-)
G114075 NA non-coding upstream 178800 18373968 ~ 18375614 (-)
LOC122360486 NA non-coding upstream 333703 18528871 ~ 18544680 (-)
G114231 NA non-coding upstream 353020 18548188 ~ 18548939 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding upstream 491998 18687166 ~ 18688395 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding upstream 544586 18739754 ~ 18740829 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other downstream 332363 17812370 ~ 17830977 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 1481162 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 1923834 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 1934874 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 2022105 16139319 ~ 16141235 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 303 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 162249 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 297458 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 454351 18649519 ~ 18650609 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other upstream 474439 18669607 ~ 18671274 (-)

Expression


Co-expression Network