LOC122360853 (LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182)


Basic Information

Item Value
gene id LOC122360853
gene name LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18675560 ~ 18680093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168504
CGTTTCCTTTCTACTGATGATTATATATTGAAAGACACCGAGCAGGAGAAAAAGTTTAGTTTCAGCCTACAGGCCTCACTGCAAACGGCTCAAACTCAACCCCTTTTAAAGGGTTATGAGATTCACGTAACCCCCTCTGTGATGCCAGAACCGtctcaaatgaaagaaatcatCACTTGCTGCGGAGCACGCTACCTCCCCAAAATGCCCTCTGCTCACAAGGAGCATGCCGTGGTGGTGTCATGTGAGCAGGACAGGGCTCTTTGTGTTAAGGCAGTGGGTATGTCATTGCCCGTGGTCAGCACAGAGTTCCTATTGACTGGCATTCTGCAGCAGAAAGTTGACCTCCAGGccttttctctcacttcctctCTCAACACGTCCAATCAGCCTGCGGCCCCCAAAGCTGCTACCAGGGGCCGAAGAAAACAGTGACAGTGACATAGGAAAGGACTTGTGTAATACATTTGTGATCAAATTTGATGTAAGGAGGTTTCGGTATAGATCGCTTAGAATGAATATGTGATGCATATGCGTACAGTTATAGGTTAGATGAGATGCTGCTACACTTGTAACCACGCACCCGACTGATTCCTGTGAATGTGAGAGCTGGAGAGAGTGTGAGGTGAATGTCAATGTATGATGAGTGTTAGTGATGGGAGAATGAGTTCCTCtcactttttaatgtattacttCAATAAACGCTTTCACAGCC
>XM_043261701.1
TATGGTATTGTTACATGTATTGCGTTATATGCTTTAGGAACTGCTGGAACCAGTGCTAGGCTCAAACCAACCCATCTTGATTTTGAGGCTACACAGGCATATGGAACCGAGACAGACATGGAGGAAGAGCAGGAGCCTCTGAACCATACCCAACCCTACTCCAACCTCTCATCTGCTGAAACTCAGCTCATCCCAGTAGCAAAGCCAGAtaatgaggaggaggaagataaAGAGACACAAAATGACTCTCACCTTTCCACAGCAGACACTGTGATCATATCCAGCACCCCAAAACGGAAGGAGGAGCAGACGCAGCCTTTTTCTCTCTTCACAGCGCAAACACAACTTGTCTGGGAGGGACAAGACAAAGAGGTTTATCAGAATGAGCCCACCCAGCTCATGACAGACACTGTTGAAGAAACAGAAGAGGCTGAGGAGGAGAACATGAAACGAGGTAGGAGAAGCCGTGGTGGAGGGACAGTACCAGCTAAAGACAGTACCAGTAAAAGCACCAGCTCCTCTTTTATAATTGCTGAAACTCAGCCCATGTGTGAGCAAGTAGAGGCAACAGATGCAAATCTGAGTGGGGATGGCTTTCAGGAACCAAGTACAAGACAACAGGCTGAGAAATATGATTCCGCACATCTTACTGAAAACAACTTTAGCTCCCATCTCACTATAGCTGAAACGCAATGGATGTGTGATGATGACAGTGCACCAGATCAAGACAAAGTGGTCAGTAGTAGTCATATAGAAAAACCCTCCAGTTCTTTTATCGCTATAGCAGAAACACAGCCAATGTTTAAGGTAGATGAAGCACCAGAGGATAATTTAAACAGTGAGGTCAGCACAAGACAAATCGAAGGTGAGCCTGTACATCATATTGAAAAGGCCTCTACCTCTAATCGTGCCATCCCTGATGCACAATCTGTTGGTGAAGACTATGAGGAACAAAATCCCAGCAGCAAGATGTCCATCACAAAATCACGCAGGTGTAGATCGAAAAAACAGAAGGAAGGCCAACAACCTGCTGAGGCTTTTGTCATTCACACTGTAGCAGAAACACAACCAATGTATGAGGAAGAACAAATTGACGATCTGAAAAGTGAGACCAGCTCTGGGAGACAACAAGCACATGAATTCAAATCTCCAGAACTTGCTGAAACAGACCTGAAAGCATTTGTCTCTGTAGCTGAAACACAACCTATGTGTGCAGAAGAGGCACCATATGAAGATCTGATTAATGCAGTTAGCACCAGAGAGATAGATGAAGACAAATCAACAAATCTCCTAGTACCCTCAAGCTCCCGTGTCAGCATAGATGAAACACAGCCTATGCTCGAGAAAGGACAGGAAAAAGACGTCAGCAACAAGATTACAAGCCCAAGATCATGCAGGGGTACACCAAAGAAAGACAAGGTAACACCAGCTGCTGAGGCTGCTGTTCATCAGACAGAAACCCAACCAGTACCTGAAGAAGTGATTGAAAAGGATGAAGATCAGAACAGTGGAGTGAAATCCAGGAGATCTCGCAGAGGAAGGCTGATAAAAGAGGACAGCATTCCACAGGAGAACGCCCAAGAAGGCCCTAGTGGCAGAAGCAGCAGAAGACAGAGAAAAGACAAGGCAGAGGTGAAGAAGGAGACAGCTGCATCTAGTAAAGTTCAAGGTAAACCTAGAAAAGGGCAGGAAGGGAAAAGAAAGAGGGGGAAAGTGTTGTCtgaggatgaggaagagagtgaagaagaaaaaaccaCAAGAAGAGGAACCAGGCGGACAGGTATAAAACTGAAGTgtaatgaaaaggaaaaagaggaaaaattaGATGAGAGGAATGCccaagaagagaaagaaaagatggAGAAAGAGCTCCAAGAACAAAAGGAGACAAAGAGGTTTGAGATGGAAGAAAAGGAGAGACTGGAGtatgagagaaagaaacaagaagaaTGTGAACAAAGAAAGCTGGCTGAAACTGAAATGAGACAAAAACTNNNNNNNNTAGAaaaagaacttttaaaaaaagaagagaatgaGAGGTTGGAAAGGGAGAGAAGGGAACTAGAAAGGAAGGAAGACGAAAGaattcagagagaaaaagaccatttagagaaagaagagaaggaAAGGGAAATGctagagagggagaggagagaaCTAGAAGAAAAACGACAAAAGGAACAAGATGAAAGAATTCAAAAGGAGAAAGAACAAAACGAGGTGGAAAGAGAACAATTAGAAAAGGAAAGACAAGAAACTGAACTTCAGATGAAAGCAAAAGAGCAAAAAAGGACTAAGGAGAGAAACCATCAGAAACAAAAGAATGAGGAGGACAAGACACAACTAGAAACTCCACTAGTTCCTCCAGCCAGACAAGCACGCCGCTGCTCAAACTCCTCTGTGAACTCCGATCAGTCTGTCTTCTCACAACAGGAAGTGTCCAGCCAGAGGGGACGAGGACGAGGCAGGGGCAGAGGCCGAGGGAAACAGACAGCTGACGAGCCACCCATTAGTGCTAGACGGTCTAGCAGGAGAGGACTAGTTAGTGCAGTTGAAGACACAGAGCAGGACTCCAATTCAACAACCCGTTCCCGATCCCGCTCCAGTTCTAGAAGTTCTGAAAGATCTGCTCATAGTGTCGGACCTTCAAACCAAGGAACCAGAGGCAGAGGCAGAGGCAGAGGCCGAAAGAGTATGAAACTGCCAGAATCGGAAGAACTTTCCCAAGCTAAAACTTCCGGAAAAGGCAGGGGAAGAGGAGGAAGGCTTTCTGGTGTGGAGAATGTATACGTCGGAATGGACAATGATCGTGAACAAGATGCTAAGGTGGAGGAGGACAACACTGCTGTACCCCAAACCAACAGCAGAGGTCGTAAGAGAGCAGCCAACACCAGCACATCCCCTGAAGTGGTTCCTTCACCCACACCCAAGACTCCAAGGCGCTCTGTGGCTAGTCAGGCGCACAAGGTGTTATTCACTGGGCTGTCAGATGAGGATGGAGAGAGAGTCGTCTCTCGGTTAGGTGGAAGCCTGGCAAAAGGAGTGAACGATATGACTCACCTGGTGACTGATAAAGCGAGACGCACTGTTAAGTTTTTGTGCGCTGTTGCCAGAGGGGTGCCAATCGTGACTCCTGATTGGCTGAAAAAatgTGGAAAAGCTGGCCGTTTCCTTTCTACTGATGATTATATATTGAAAGACACCGAGCAGGAGAAAAAGTTTAGTTTCAGCCTACAGGCCTCACTGCAAACGGCTCAAACTCAACCCCTTTTAAAGGGTTATGAGATTCACGTAACCCCCTCTGTGATGCCAGAACCGtctcaaatgaaagaaatcatCACTTGCTGCGGAGCACGCTACCTCCCCAAAATGCCCTCTGCTCACAAGGAGCATGCCGTGGTGGTGTCATGTGAGCAGGACAGGGCTCTTTGTGTTAAGGCAGTGGGTATGTCATTGCCCGTGGTCAGCACAGAGTTCCTATTGACTGGCATTCTGCAGCAGAAAGTTGACCTCCAGGccttttctctcacttcctctCTCAACACGTCCAATCAGCCTGCGGCCCCCAAAGCTGCTACCAGGGGCCGAAGAAAACAGTGACAGTGACATAGGAAAGGACTTGTGTAATACATTTGTGATCAAATTTGATGTAAGGAGGTTTCGGTATAGATCGCTTAGAATGAATATGTGATGCATATGCGTACAGTTATAGGTTAGATGAGATGCTGCTACACTTGTAACCACGCACCCGACTGATTCCTGTGAATGTGAGAGCTGGAGAGAGTGTGAGGTGAATGTCAATGTATGATGAGTGTTAGTGATGGGAGAATGAGTTCCTCtcactttttaatgtattacttCAATAAACGCTTTCACAGCCAAAATAACGCAAA

Function

NR:

description
PREDICTED: mediator of DNA damage checkpoint protein 1-like

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU168504 False 715 TUCP 0.46 3 18679190 18680080
XM_043261701.1 True 3893 mRNA 0.46 6 18675560 18680093

Neighbor

gene id symbol gene type direction distance location
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding upstream 1849 18671959 ~ 18673711 (+)
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding upstream 63088 18608982 ~ 18612472 (+)
ndrg1b ndrg1b coding upstream 78736 18592268 ~ 18596824 (+)
scxb scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100 coding upstream 132923 18539263 ~ 18542637 (+)
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding upstream 436235 18232044 ~ 18239325 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding downstream 3226 18683319 ~ 18684515 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding downstream 24310 18704403 ~ 18751686 (+)
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding downstream 82171 18762264 ~ 18779383 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding downstream 301996 18982089 ~ 18983105 (+)
LOC122360015 apoa2,LOC107592541,LOC107726689,LOC107688286,LOC107592191,LOC107728486,LOC107726687 coding downstream 304817 18984910 ~ 18986011 (+)
G114175 NA non-coding upstream 6373 18667845 ~ 18669187 (+)
G114172 NA non-coding upstream 10798 18663828 ~ 18664762 (+)
LOC122360728 NA non-coding upstream 21955 18650773 ~ 18653605 (+)
G114106 NA non-coding upstream 53154 18516618 ~ 18622406 (+)
G114104 NA non-coding upstream 113649 18561280 ~ 18561911 (+)
G114132 NA non-coding downstream 86525 18766618 ~ 18888286 (+)
LOC122360693 NA non-coding downstream 141424 18821517 ~ 18825388 (+)
G114299 NA non-coding downstream 297458 18977551 ~ 18979872 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding downstream 388509 19068602 ~ 19112727 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding downstream 415637 19095730 ~ 19156067 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 828150 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 938078 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 1268364 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 1763679 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1851577 16767060 ~ 16823983 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 78212 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 128651 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 147161 18827254 ~ 18841584 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 517711 19197804 ~ 19253046 (+)
fxyd11 NA other downstream 600290 19280383 ~ 19283515 (+)

Expression


Co-expression Network