RNA id: XM_043261701.1


Basic Information

Item Value
RNA id XM_043261701.1
length 3893
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC122360853
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18675560 ~ 18680093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGGTATTGTTACATGTATTGCGTTATATGCTTTAGGAACTGCTGGAACCAGTGCTAGGCTCAAACCAACCCATCTTGATTTTGAGGCTACACAGGCATATGGAACCGAGACAGACATGGAGGAAGAGCAGGAGCCTCTGAACCATACCCAACCCTACTCCAACCTCTCATCTGCTGAAACTCAGCTCATCCCAGTAGCAAAGCCAGAtaatgaggaggaggaagataaAGAGACACAAAATGACTCTCACCTTTCCACAGCAGACACTGTGATCATATCCAGCACCCCAAAACGGAAGGAGGAGCAGACGCAGCCTTTTTCTCTCTTCACAGCGCAAACACAACTTGTCTGGGAGGGACAAGACAAAGAGGTTTATCAGAATGAGCCCACCCAGCTCATGACAGACACTGTTGAAGAAACAGAAGAGGCTGAGGAGGAGAACATGAAACGAGGTAGGAGAAGCCGTGGTGGAGGGACAGTACCAGCTAAAGACAGTACCAGTAAAAGCACCAGCTCCTCTTTTATAATTGCTGAAACTCAGCCCATGTGTGAGCAAGTAGAGGCAACAGATGCAAATCTGAGTGGGGATGGCTTTCAGGAACCAAGTACAAGACAACAGGCTGAGAAATATGATTCCGCACATCTTACTGAAAACAACTTTAGCTCCCATCTCACTATAGCTGAAACGCAATGGATGTGTGATGATGACAGTGCACCAGATCAAGACAAAGTGGTCAGTAGTAGTCATATAGAAAAACCCTCCAGTTCTTTTATCGCTATAGCAGAAACACAGCCAATGTTTAAGGTAGATGAAGCACCAGAGGATAATTTAAACAGTGAGGTCAGCACAAGACAAATCGAAGGTGAGCCTGTACATCATATTGAAAAGGCCTCTACCTCTAATCGTGCCATCCCTGATGCACAATCTGTTGGTGAAGACTATGAGGAACAAAATCCCAGCAGCAAGATGTCCATCACAAAATCACGCAGGTGTAGATCGAAAAAACAGAAGGAAGGCCAACAACCTGCTGAGGCTTTTGTCATTCACACTGTAGCAGAAACACAACCAATGTATGAGGAAGAACAAATTGACGATCTGAAAAGTGAGACCAGCTCTGGGAGACAACAAGCACATGAATTCAAATCTCCAGAACTTGCTGAAACAGACCTGAAAGCATTTGTCTCTGTAGCTGAAACACAACCTATGTGTGCAGAAGAGGCACCATATGAAGATCTGATTAATGCAGTTAGCACCAGAGAGATAGATGAAGACAAATCAACAAATCTCCTAGTACCCTCAAGCTCCCGTGTCAGCATAGATGAAACACAGCCTATGCTCGAGAAAGGACAGGAAAAAGACGTCAGCAACAAGATTACAAGCCCAAGATCATGCAGGGGTACACCAAAGAAAGACAAGGTAACACCAGCTGCTGAGGCTGCTGTTCATCAGACAGAAACCCAACCAGTACCTGAAGAAGTGATTGAAAAGGATGAAGATCAGAACAGTGGAGTGAAATCCAGGAGATCTCGCAGAGGAAGGCTGATAAAAGAGGACAGCATTCCACAGGAGAACGCCCAAGAAGGCCCTAGTGGCAGAAGCAGCAGAAGACAGAGAAAAGACAAGGCAGAGGTGAAGAAGGAGACAGCTGCATCTAGTAAAGTTCAAGGTAAACCTAGAAAAGGGCAGGAAGGGAAAAGAAAGAGGGGGAAAGTGTTGTCtgaggatgaggaagagagtgaagaagaaaaaaccaCAAGAAGAGGAACCAGGCGGACAGGTATAAAACTGAAGTgtaatgaaaaggaaaaagaggaaaaattaGATGAGAGGAATGCccaagaagagaaagaaaagatggAGAAAGAGCTCCAAGAACAAAAGGAGACAAAGAGGTTTGAGATGGAAGAAAAGGAGAGACTGGAGtatgagagaaagaaacaagaagaaTGTGAACAAAGAAAGCTGGCTGAAACTGAAATGAGACAAAAACTNNNNNNNNTAGAaaaagaacttttaaaaaaagaagagaatgaGAGGTTGGAAAGGGAGAGAAGGGAACTAGAAAGGAAGGAAGACGAAAGaattcagagagaaaaagaccatttagagaaagaagagaaggaAAGGGAAATGctagagagggagaggagagaaCTAGAAGAAAAACGACAAAAGGAACAAGATGAAAGAATTCAAAAGGAGAAAGAACAAAACGAGGTGGAAAGAGAACAATTAGAAAAGGAAAGACAAGAAACTGAACTTCAGATGAAAGCAAAAGAGCAAAAAAGGACTAAGGAGAGAAACCATCAGAAACAAAAGAATGAGGAGGACAAGACACAACTAGAAACTCCACTAGTTCCTCCAGCCAGACAAGCACGCCGCTGCTCAAACTCCTCTGTGAACTCCGATCAGTCTGTCTTCTCACAACAGGAAGTGTCCAGCCAGAGGGGACGAGGACGAGGCAGGGGCAGAGGCCGAGGGAAACAGACAGCTGACGAGCCACCCATTAGTGCTAGACGGTCTAGCAGGAGAGGACTAGTTAGTGCAGTTGAAGACACAGAGCAGGACTCCAATTCAACAACCCGTTCCCGATCCCGCTCCAGTTCTAGAAGTTCTGAAAGATCTGCTCATAGTGTCGGACCTTCAAACCAAGGAACCAGAGGCAGAGGCAGAGGCAGAGGCCGAAAGAGTATGAAACTGCCAGAATCGGAAGAACTTTCCCAAGCTAAAACTTCCGGAAAAGGCAGGGGAAGAGGAGGAAGGCTTTCTGGTGTGGAGAATGTATACGTCGGAATGGACAATGATCGTGAACAAGATGCTAAGGTGGAGGAGGACAACACTGCTGTACCCCAAACCAACAGCAGAGGTCGTAAGAGAGCAGCCAACACCAGCACATCCCCTGAAGTGGTTCCTTCACCCACACCCAAGACTCCAAGGCGCTCTGTGGCTAGTCAGGCGCACAAGGTGTTATTCACTGGGCTGTCAGATGAGGATGGAGAGAGAGTCGTCTCTCGGTTAGGTGGAAGCCTGGCAAAAGGAGTGAACGATATGACTCACCTGGTGACTGATAAAGCGAGACGCACTGTTAAGTTTTTGTGCGCTGTTGCCAGAGGGGTGCCAATCGTGACTCCTGATTGGCTGAAAAAatgTGGAAAAGCTGGCCGTTTCCTTTCTACTGATGATTATATATTGAAAGACACCGAGCAGGAGAAAAAGTTTAGTTTCAGCCTACAGGCCTCACTGCAAACGGCTCAAACTCAACCCCTTTTAAAGGGTTATGAGATTCACGTAACCCCCTCTGTGATGCCAGAACCGtctcaaatgaaagaaatcatCACTTGCTGCGGAGCACGCTACCTCCCCAAAATGCCCTCTGCTCACAAGGAGCATGCCGTGGTGGTGTCATGTGAGCAGGACAGGGCTCTTTGTGTTAAGGCAGTGGGTATGTCATTGCCCGTGGTCAGCACAGAGTTCCTATTGACTGGCATTCTGCAGCAGAAAGTTGACCTCCAGGccttttctctcacttcctctCTCAACACGTCCAATCAGCCTGCGGCCCCCAAAGCTGCTACCAGGGGCCGAAGAAAACAGTGACAGTGACATAGGAAAGGACTTGTGTAATACATTTGTGATCAAATTTGATGTAAGGAGGTTTCGGTATAGATCGCTTAGAATGAATATGTGATGCATATGCGTACAGTTATAGGTTAGATGAGATGCTGCTACACTTGTAACCACGCACCCGACTGATTCCTGTGAATGTGAGAGCTGGAGAGAGTGTGAGGTGAATGTCAATGTATGATGAGTGTTAGTGATGGGAGAATGAGTTCCTCtcactttttaatgtattacttCAATAAACGCTTTCACAGCCAAAATAACGCAAA

Function

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168550 lncRNA upstream 6373 18667845 ~ 18669187 (+) True G114175
TU168546 lncRNA upstream 10798 18663828 ~ 18664762 (+) True G114172
TU168547 lncRNA upstream 10798 18663973 ~ 18664762 (+) False G114172
XR_006252834.1 lncRNA upstream 21955 18650773 ~ 18653605 (+) True LOC122360728
TU168497 lncRNA upstream 24985 18649391 ~ 18650575 (+) False G114131
TU168501 lncRNA downstream 86525 18766618 ~ 18888286 (+) True G114132
XR_006252829.1 lncRNA downstream 128651 18808744 ~ 18821024 (+) False LOC122360692
XR_006252828.1 lncRNA downstream 129076 18809169 ~ 18821024 (+) False LOC122360692
XR_006252830.1 lncRNA downstream 141424 18821517 ~ 18825388 (+) True LOC122360693
XR_006252770.1 lncRNA downstream 147161 18827254 ~ 18841584 (+) True LOC122360132
XM_043260271.1 mRNA upstream 1849 18671959 ~ 18673711 (+) True LOC122360004
XM_043261419.1 mRNA upstream 63088 18608982 ~ 18612472 (+) True LOC122360632
XM_043260125.1 mRNA upstream 78736 18592268 ~ 18596824 (+) True ndrg1b
XM_043261117.1 mRNA upstream 132923 18539263 ~ 18542637 (+) True scxb
XM_043260816.1 mRNA upstream 436235 18232044 ~ 18239325 (+) True fam210ab
XM_043261626.1 mRNA downstream 3226 18683319 ~ 18684515 (+) True LOC122360773
XM_043260648.1 mRNA downstream 24310 18704403 ~ 18751686 (+) True LOC122360227
XM_043260647.1 mRNA downstream 36060 18716153 ~ 18746824 (+) False LOC122360227
XM_043260124.1 mRNA downstream 78212 18758305 ~ 18761771 (+) True LOC122359904
XM_043261901.1 mRNA downstream 82171 18762264 ~ 18779383 (+) True LOC122361002
TU168130 other upstream 828150 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1268364 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1273803 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1851582 16767060 ~ 16823978 (+) False sec61b
TU168569 other downstream 78291 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 129061 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 147161 18827254 ~ 18840228 (+) False LOC122360132
TU168814 other downstream 517711 19197804 ~ 19253046 (+) True G114352
TU168846 other downstream 647011 19327104 ~ 19328763 (+) True G114382

Expression Profile