RNA id: XR_006252770.1


Basic Information

Item Value
RNA id XR_006252770.1
length 2273
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122360132
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18827254 ~ 18841584 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTGACCAAACAGCGGTGGACGCAAAGCTGACCAGCTCGCGGCCATCCAACTGTTTCAGCAGGGCAGCCCAGAGCCAAGGACACCTTGccatgacacaaaaaaaaaacaaatggagaGACAACTGTCCCTCAGGTCAGAACAGGTGCTGCGGGACAGGCCAGAGTCTGCCGGGACAGCTGTACTATTCCTGTCCGGAACAGAGCCGGCTGACTGCGGATCCACAGAGACTAATGACAGATGGACAGGTGGGGGAGCCCTCGAACGGCCCGGAGATTTCTGCTTTATACCGCAAGATAATGGCGGAATTTATTCACTCCGATGAGCAAtttccacacatacacacagactcGTGGAAAAACACCGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACGTGACTGCGACCTCACACATCCGGGTCAGTGCATCCGAGCAGGGGAACAAAGGCAGAGCTGGTCCCAGAATGTGAGTTCCCAATTACCCTTGAGTGAGATCCACGGAGCAGAATGCTGCAGGTGAGAAGTTGGATGGGGCCTCTGTGATGGGCTGGCAGAGACACAATCGACCTCTGTGGCACCGGCTTGGAATCGCTGCGTGCCTGCGATGAAAAATGCTGAGGGCACAACACAAAACAGCACACAGACTAATGAATTCAGTGCATGTGTAATTTATGACAAGCAGAAGGCTCCTTCATTTTTTCCGGTGTGAAGCTGCATGCTACTTTAATGTGAAATGCGGCAAATTAAATACGTATTTAAGAGCCGGCTATCAAGAGGCATGTGTCACGTGAGGTCTTTGACCCACATAACAGatactaatataatttttttttttttcatatgggcgatgaaaggaaatgttttaaagaatatttgaGAGTTCATGGTGACTGTTGTCATCAACTtccaaaaagataaaaaaatctaaagaaactTTATAAAGCACAGaattttctaatatataaagtatttttttatatatttttttaacaaattgttACATTTGTGGTGTCAAAAATTACTggcctttttattgttttctttcagttatcacaggttttgtatttctttgaTTGATTATCAAAGGCCTAATTTATCTGAGCTAATGCCCCTCAGTTTTTCAGTACATATTGCCAAAATAATGCACAAATGTGTAGggtttttttcacttaaaaccTGAGATTCTTAAACGTAGACCAATGGGATCTACAGTCACTTCCAAATATACAGAAGTACATAACCTGTGGTAAATGAAAGAGAAGTCGACAAGTTAATTGAcaattaaataagcaaataaaatacttaGTTATAACTGAGTACTAACCAAGGAGCAGATAAGTCATTATACAGATAAGCATTtcagatctttttttgtttatgtcagattcaaaaaaagtgcatttgtacATCAAAATAGTCAGCATCACCTACCGGTgttattttttgtgctttttcaaaCATATCCCTCAAGTTTGGcgtgaactgttgctttaaaaatcaGTTAAGTAAACATATTAATTGATCAAAACTTGTCAGACAAACACAGCATGCAGTGGCAGATGTTGTCAATTGTCAAAGTGAACGCGATAGGAAATTTGCCTAAAGGCCACGAGGACTGAATGCTGTATCTCATCTCAACACGTTCCCTTTCTGTTAACAGTTCAATGGCATGTCATCTCTGCAACAATTACCCTGTCCTTACTGTACCGGATAACTCGATAGAATATGACTGTGATCTAATGTAGTAGGTCCATCAGTGCTGGTGTAATGAGAGTGGAGTTCACACAGAGATCAGGAATCAATGTTCAGCTCTGCAAAGGGCATATAGAGTTTGTTAGTGATGTTCATGAAAAACTCAAATGAAGTTATAAACATtctctgcaaaaaaacattccaaaagtccaaaagccttaaaataaattaaataaattaatatggattaaataatatataataataataataataataataatattaataatatttataacgTTTTTAGATAATTTATTAACTCGGTCGCTGTGTATTTTGACACAATAACTACAAGGCTATTGACAGCAAcgtaattatttaatgtaataattgatttaatattaaattaaataataatttagataatttgtatatacatttaaaaaaacattttgacacaaaattaagttaaaatttaGATATCTTTAATAAATTTCTTTTAGAGCATCATTCTTTAACataaaattgataataataattttgatcatattttacatggtataatttgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252830.1 lncRNA upstream 1866 18821517 ~ 18825388 (+) True LOC122360693
XR_006252829.1 lncRNA upstream 6230 18808744 ~ 18821024 (+) False LOC122360692
XR_006252828.1 lncRNA upstream 6230 18809169 ~ 18821024 (+) False LOC122360692
TU168550 lncRNA upstream 158067 18667845 ~ 18669187 (+) True G114175
TU168546 lncRNA upstream 162492 18663828 ~ 18664762 (+) True G114172
TU168743 lncRNA downstream 135967 18977551 ~ 18979872 (+) True G114299
TU168765 lncRNA downstream 227018 19068602 ~ 19112727 (+) True G114316
TU168784 lncRNA downstream 254146 19095730 ~ 19156067 (+) True G114328
TU168785 lncRNA downstream 254146 19095730 ~ 19156067 (+) False G114328
TU168816 lncRNA downstream 360810 19202394 ~ 19205964 (+) True G114354
XM_043261901.1 mRNA upstream 47871 18762264 ~ 18779383 (+) True LOC122361002
XM_043260124.1 mRNA upstream 65483 18758305 ~ 18761771 (+) True LOC122359904
XM_043260648.1 mRNA upstream 75568 18704403 ~ 18751686 (+) True LOC122360227
XM_043260647.1 mRNA upstream 80430 18716153 ~ 18746824 (+) False LOC122360227
XM_043261626.1 mRNA upstream 142739 18683319 ~ 18684515 (+) True LOC122360773
XM_043260294.1 mRNA downstream 140505 18982089 ~ 18983105 (+) True LOC122360014
XM_043260295.1 mRNA downstream 143326 18984910 ~ 18986011 (+) True LOC122360015
XM_043260301.1 mRNA downstream 160967 19002551 ~ 19013239 (+) True LOC122360019
XM_043260297.1 mRNA downstream 187482 19029066 ~ 19052616 (+) True ntrk1
XM_043260298.1 mRNA downstream 187482 19029066 ~ 19052616 (+) False ntrk1
TU168577 other upstream 6118 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 66352 18758384 ~ 18760902 (+) False LOC122359904
TU168504 other upstream 147174 18679190 ~ 18680080 (+) False LOC122360853
TU168130 other upstream 979844 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1420058 17400334 ~ 17407196 (+) True acbd7
TU168814 other downstream 356220 19197804 ~ 19253046 (+) True G114352
TU168846 other downstream 485520 19327104 ~ 19328763 (+) True G114382
TU169046 other downstream 804374 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 1378060 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 2297297 21138881 ~ 21138952 (+) True trnae-cuc_37

Expression Profile