RNA id: XM_043260294.1


Basic Information

Item Value
RNA id XM_043260294.1
length 595
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122360014
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18982089 ~ 18983105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGGTCACCCTTTGAACTTGTCCCAGGATTATATAAGCCCTCGGCTCTTTGGAGAACACACCATCAGCTCAAGAACCCTGGAAGCAAGGAAAATCTCACTCAACCAGCAGCCATGAAATTCTCCCTCATTGCCGTCCTTGTTGTTGCTCTGGCCATCGGCTCTGAGTCGGCTTCTCTGGTCAAGAGAGACGCTCCTGCTGAGCTGGATAAGATCGCCAAGTACTTCCAGGACCTCGTGGACAGCCTGAAGAACGTTGAGGGCCCTGAGCTGGCCAACAAGGCCAACGCTTACTTTGAGCAGAGTAGAGCCCAGTTTCAGCCCATGGTTGAGAAGCTCCAGGAGCAGCTGAAGCCCCTCTCCAGCAACATTGAAGACCACATCAAGCCTCTGGCCGCCTCCGTCCAGGCTCAGGTCGCCCCCCTCGCCGGCTTGGTCCAGAGCCAGGTTGAAGATGTCCTCAAGTTTGTGGCTGACCAGAGCAAAGCCATCCTGCCTCCTCAGTAAAACCATTGCTTAGTTCTTTTCCATTTTGACAGAATCTCTAAGTATGTATGCTGGtgtgtttgaaataataaaaaagattaaaaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168743 lncRNA upstream 2217 18977551 ~ 18979872 (+) True G114299
TU168501 lncRNA upstream 93803 18766618 ~ 18888286 (+) True G114132
XR_006252770.1 lncRNA upstream 140505 18827254 ~ 18841584 (+) True LOC122360132
XR_006252830.1 lncRNA upstream 156701 18821517 ~ 18825388 (+) True LOC122360693
XR_006252829.1 lncRNA upstream 161065 18808744 ~ 18821024 (+) False LOC122360692
TU168765 lncRNA downstream 85497 19068602 ~ 19112727 (+) True G114316
TU168784 lncRNA downstream 112625 19095730 ~ 19156067 (+) True G114328
TU168785 lncRNA downstream 112625 19095730 ~ 19156067 (+) False G114328
TU168816 lncRNA downstream 219289 19202394 ~ 19205964 (+) True G114354
TU168807 lncRNA downstream 262828 19245933 ~ 19248320 (+) True G114345
XM_043261901.1 mRNA upstream 202706 18762264 ~ 18779383 (+) True LOC122361002
XM_043260124.1 mRNA upstream 220318 18758305 ~ 18761771 (+) True LOC122359904
XM_043260648.1 mRNA upstream 230403 18704403 ~ 18751686 (+) True LOC122360227
XM_043260647.1 mRNA upstream 235265 18716153 ~ 18746824 (+) False LOC122360227
XM_043261626.1 mRNA upstream 297574 18683319 ~ 18684515 (+) True LOC122360773
XM_043260295.1 mRNA downstream 1805 18984910 ~ 18986011 (+) True LOC122360015
XM_043260301.1 mRNA downstream 19446 19002551 ~ 19013239 (+) True LOC122360019
XM_043260297.1 mRNA downstream 45961 19029066 ~ 19052616 (+) True ntrk1
XM_043260298.1 mRNA downstream 45961 19029066 ~ 19052616 (+) False ntrk1
XM_043261351.1 mRNA downstream 231381 19214486 ~ 19240639 (+) False rgl2
TU168498 other upstream 124659 18649391 ~ 18857430 (+) False G114131
TU168594 other upstream 141861 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 160953 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 221187 18758384 ~ 18760902 (+) False LOC122359904
TU168504 other upstream 302009 18679190 ~ 18680080 (+) False LOC122360853
TU168814 other downstream 214699 19197804 ~ 19253046 (+) True G114352
TU168846 other downstream 343999 19327104 ~ 19328763 (+) True G114382
TU169046 other downstream 662853 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 1236539 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 2155776 21138881 ~ 21138952 (+) True trnae-cuc_37

Expression Profile