RNA id: TU168498


Basic Information

Item Value
RNA id TU168498
length 1134
RNA type TUCP
GC content 0.45
exon number 5
gene id G114131
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18648545 ~ 18857430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaatatttaataaacacagcAGTGTAACAGTAAAGAATGCATTAtcatgtgtatttaaaaaacaaacggATTAGTGATGCTTTCttcacatataacatataaaataattgtcgTGAATTTAACCATCCATCATCCTGCCAGCTGCATCATGGCAGTTATCAAACAAAAGTTTGTAGTCTGTTCCTCCAGCTTTAACAAAGTCAGACACTGTCTTGCTCCCACCAAAATTTTTTGTCTCAACAATCTCCAGTTATTGGCCATATGACGGGCAGCCACAACAACAGTTTGGGATGAGATGCCATAGCCGTCTCCTTTATGGACCAGCCATTTAGAGCCGTCTGCTATAGTCACTCTAAAATGGCTAAGTTTGCCTATTTGGAATGACATCCCCTCTAGAGGCCTGGTCATCCTCTCTGCCTTAAATACTTTGGAGTTGTATAGCTTCGTCAGATCAGACATTTTGGAAATGTCATAACTGTAAGAGTTTCCGTTCCGTTGCCCCATGAGGATTCAGCCACCATGGCCACCATGGCCAGGAGAAGTAGACCCAGTGCAGTCTTGAAGGACGCCGAGAAGATCGAAGCGAGATCACCTTCCGAGATCTTCGTGGAAAACGGCGAAACTTTACTTCTCTACTCAGACGAGGTCTTGGGATATTTACGCAGAAGAGAGGAGGGTGGCATAATTATCGTGCGAGAAATCCCAAAAGCGTGTTCATCTTGGAGTTTCGGATGCTCCCGAATACTGTCAGTTCTGCGCGATAGTGTCCGAGGGAACAGCGGAGGACCATCCGCTCGAAACTTGGCGATCTTCTCGAAATCCCGCGTGTGAAGTTTGGCGTTATTTGCGAGACAGCTCGCGAACGCGGGTATCGCGAGGCATTTAAAGGAAGAGACGAAATAAAAGGCGCTTTCCAATCCTCGTACGCCGAATCGCAGTATTCGTCCAAGCGAGAGCGCACGCGAAATATAACTGCGAAAAAtacgcaaaaaaaataaaaatgaatgaacgcTGAGAACTGTTTCCGCGTGACACGGTACTCTGTGCCGCGAAAGATCCTAAATAATCCGTCAAAACTTGTAGGTCGTGTTTACAAGAGGAGATTCGGCGTGTTTCACTCGCCAGCTGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168462 lncRNA upstream 26985 18516618 ~ 18622406 (+) True G114106
TU168458 lncRNA upstream 87480 18561280 ~ 18561911 (+) True G114104
TU168457 lncRNA upstream 88422 18560214 ~ 18560969 (+) True G114103
TU168298 lncRNA upstream 271750 18320745 ~ 18377641 (+) True G113988
TU168272 lncRNA upstream 364627 18284154 ~ 18284764 (+) True G113969
TU168743 lncRNA downstream 120121 18977551 ~ 18979872 (+) True G114299
TU168765 lncRNA downstream 211172 19068602 ~ 19112727 (+) True G114316
TU168784 lncRNA downstream 238300 19095730 ~ 19156067 (+) True G114328
TU168785 lncRNA downstream 238300 19095730 ~ 19156067 (+) False G114328
TU168816 lncRNA downstream 344964 19202394 ~ 19205964 (+) True G114354
XM_043261419.1 mRNA upstream 36919 18608982 ~ 18612472 (+) True LOC122360632
XM_043260125.1 mRNA upstream 52567 18592268 ~ 18596824 (+) True ndrg1b
XM_043261117.1 mRNA upstream 106754 18539263 ~ 18542637 (+) True scxb
XM_043260816.1 mRNA upstream 410066 18232044 ~ 18239325 (+) True fam210ab
XM_043260410.1 mRNA upstream 427455 18221031 ~ 18221936 (+) True mc2r
XM_043260294.1 mRNA downstream 124659 18982089 ~ 18983105 (+) True LOC122360014
XM_043260295.1 mRNA downstream 127480 18984910 ~ 18986011 (+) True LOC122360015
XM_043260301.1 mRNA downstream 145121 19002551 ~ 19013239 (+) True LOC122360019
XM_043260297.1 mRNA downstream 171636 19029066 ~ 19052616 (+) True ntrk1
XM_043260298.1 mRNA downstream 171636 19029066 ~ 19052616 (+) False ntrk1
TU168130 other upstream 801981 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1242195 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1247634 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1825413 16767060 ~ 16823978 (+) False sec61b
TU167460 other upstream 1825413 16820950 ~ 16823978 (+) False sec61b
TU168814 other downstream 340374 19197804 ~ 19253046 (+) True G114352
TU168846 other downstream 469674 19327104 ~ 19328763 (+) True G114382
TU169046 other downstream 788528 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 1362214 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 2281451 21138881 ~ 21138952 (+) True trnae-cuc_37

Expression Profile