RNA id: TU168458


Basic Information

Item Value
RNA id TU168458
length 526
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G114104
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18561280 ~ 18561911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCCACAAGTAGTTCAGGGCCTTTAAAATATCGGGAAGCCACACGTACATTGTACTCCTGGTTGGGGTGGTAAAACTCAGCCAAGCCCCAATCAATCAAAcgaagcttaaaaaaaaaaaaattttttaaattaagccaATAAGATACTCATTTTAATTAGAAAGGATttcttttaacttaaaaaaaatcctgcttGTATTGAGTGTATTATGGTTttcactgaaaatattaaagcagaatgaatgtttttaatagtaacatgaaaaaaaaagtgcacatcaaatatacatattagaatgatttcttaaggatcatgtgatactagATAGTCATGGCATTGTGTGGCTTTACGTCTCTGTGCATTATTCCCATACTGTGGCAGTAGTCGAGAGCCTGGGGACAGAAGAGTGGAGAGAAGAATTAGATCAGACATCAATTTGAGCAGACCGCTTGGGCACTGCTGAAACTTTCTAACCTAAACAAGGGGCAAAACTGAAACCGCTTTGCCTCTGCAAAATTAGCTTG

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168457 lncRNA upstream 311 18560214 ~ 18560969 (+) True G114103
TU168298 lncRNA upstream 183639 18320745 ~ 18377641 (+) True G113988
TU168272 lncRNA upstream 276516 18284154 ~ 18284764 (+) True G113969
TU168255 lncRNA upstream 360851 18199250 ~ 18200429 (+) True G113954
TU168243 lncRNA upstream 424291 18133886 ~ 18136989 (+) True G113942
TU168496 lncRNA downstream 86634 18648545 ~ 18650575 (+) True G114131
TU168494 lncRNA downstream 87480 18649391 ~ 18650575 (+) False G114131
TU168495 lncRNA downstream 87480 18649391 ~ 18650575 (+) False G114131
TU168497 lncRNA downstream 87480 18649391 ~ 18650575 (+) False G114131
XR_006252834.1 lncRNA downstream 88862 18650773 ~ 18653605 (+) True LOC122360728
XM_043261117.1 mRNA upstream 18643 18539263 ~ 18542637 (+) True scxb
XM_043260816.1 mRNA upstream 321955 18232044 ~ 18239325 (+) True fam210ab
XM_043260410.1 mRNA upstream 339344 18221031 ~ 18221936 (+) True mc2r
XM_043261631.1 mRNA upstream 366470 18160023 ~ 18194810 (+) False pear1
XM_043260125.1 mRNA downstream 30357 18592268 ~ 18596824 (+) True ndrg1b
XM_043261419.1 mRNA downstream 47071 18608982 ~ 18612472 (+) True LOC122360632
XM_043260271.1 mRNA downstream 110048 18671959 ~ 18673711 (+) True LOC122360004
XM_043261701.1 mRNA downstream 113649 18675560 ~ 18680093 (+) True LOC122360853
XM_043261626.1 mRNA downstream 121408 18683319 ~ 18684515 (+) True LOC122360773
TU168130 other upstream 713870 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1154084 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1159523 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1737302 16767060 ~ 16823978 (+) False sec61b
TU168498 other downstream 87480 18649391 ~ 18857430 (+) False G114131
TU168504 other downstream 117279 18679190 ~ 18680080 (+) False LOC122360853
TU168569 other downstream 196473 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 247243 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 265343 18827254 ~ 18840228 (+) False LOC122360132

Expression Profile