RNA id: XM_043261631.1


Basic Information

Item Value
RNA id XM_043261631.1
length 3983
RNA type mRNA
GC content 0.50
exon number 24
gene id pear1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18160023 ~ 18194810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCACTCCTCGCGCACTCGCGATTCGATTGTTTTTGAGGTTCTGTCAGTGTCGCGCGCTCTCCAGCGCACAGGATAGAGACACGGAGAGTGATTTAGCACACACCGCTTCAGCGATCACTTTGGGAGTAAGACACCGCTTCCAAAGAAATCTACAAAAGGACGTACGTCTGCGAGAGCGTCTTGATCGCCGGAGCACTCCGTCTCTTCGCTCAATAAAGTTCCATGCCACTTCTCCAGTAAGGATGAAGACGGAGGAGATCTGTGTGGTCCTGTTTGTCTTGGGCTGCGTGTGTGAACTGTCATTGTCTCTGGACCCCCGAGATTCAAATGTTTGCAGCTTATGGGAAAGTTTTACCACTTCAGTGAAGGTATCATATGCTCAACCTTTCGACCAAGTGAAGTACGACGAGGCCTGCTCTGAACCCTGGAACGATAACAAATGCACCCGACACAGGATCACCTATAAAACACTTTACAGGCAGGTGGTGAAAATGGACTATCGGAGGAGGTATCAGTGCTGCCGCGGTTTCTATGAGAGCAGAAGTAAATGTGTTCcccgTTGCACTAAGGAGTGTGTCCATGGCCGCTGCGTAGCACCTGATCGCTGCCAATGTGAGAGCGGCTGGCGTGGAGAAGACTGTTCCAGCTCATGTGATGCTGAGCATTGGGGTCCAGGCTGCAGGCAGCGCTGCGAGTGCCAGAACGGAGGAGAGTGTGACGTTATTAAAGGAAGCTGCCAGTGCCCAGCCGGATACACTGGTGAACACTGCCAGGACCCCTGTCCTGCAAAGACATTCGGTCAGGGCTGTCTGCAGCAGTGCCAGTGTGGAACAGGAGGATTCTGTAATAAAACCACTGGAGAATGCGTGTGCAGAGACGGATTTACTGGAACTCTGTGCCAGGTCCCATGCATGCGGCCGAGCCGCTGTCCTGCACGCTGCCCGTGTCAGAACGGAGGCATCTGCCAGGGGAGAggggtgtgtttgtgtcctCCTGGCTGGATGgGAGCAGTGTGTACCGAACGGTGTCCACCAGGCCGTTTTGGCACAAACTGTTCTAAAGAATGTTTGTGCCATAATGGAGGCCACTGTGATTCAGAAAAAGGCCAATGTCAGTGTGATGCAGGCTACACTGGTGAAAGGTGTAACGAGGAGTGTCCGGTGGGAACGTACGGTGAGGACTGTAAGGGTGTGTGTGACTGTGCTAACGGAGCCCGGTGCTATAACATCCACGGTGGCTGTTTGTGTGAGCCGGGGTTTAAGGGTCCACGCTGTGATCAAAGGATGTGTCCCGATGGGACCTATGGCATGCACTGCGAACACCGCTGCCTCTGCAACTTACAAAACACTCTCAGCTGTCATCCTCTGAAGGGGGAGTGTACCTGTCAGCCTGGGCTGGCGGGGCTATATTGTAATGAAAGCTGTGCTGATGGTTATTATGGTAACGGATGCCTGGAGCCCTGTCTCTGTGTGAACGGAGGGGTGTGTGACACGGTGACGGGCCAGTGCCTCTGTTCACCCGGATACACAgGTCTACACTGCGAGAAGCTTTGCGAGGATGGTTTCTATGGGAAAGACTGCTTGTCTCCCTGTACTTGTGTAAACTCTATAGCCTGCTCTCCCATCGATGGAACATGTTTCTGTAAGGAAGgttgGAGAGGACTTGACTGTTCTATCGCATGTTCAGAGGGCACATGGGGTCCTGGCTGCAACTTGACATGTCAGTGTGTAAATGGAGCATCCTGCCACCCCGCCGATGGTTCTTGCAAGTGCACCTCAGGGTGGAGAGGGGCTTCCTGTGACGAGCGCTGTCCAATCGGGACATTCGGCCCAGGCTGTCAACACAAATGTGACTGTCTGCATGATGAAGGATGTGAGAGTGTTACAGGCCAGTGTCTGTGTTTACCTGGCTGGACAGGTCTGCGCTGTACACAGCAGTGTCCAGAGGGAACGTGGGGCCTTCAGTGCAACCAAACCTGTTCCTGCCTCAACAGCGCCACCTGTCATGCACATATAGGAACCTGCCTGTGCAAACCTGGATTCTGGGGAGCTCAGTGTCAACACATGTGTAGTGCTGGTCTGTTTGGAGAGAGGTGTAGCCGTCAATGCCCATCATGTGTACATGCCTCCTCCTGTCATCACATAACAGGAGATTGTCTGTGTCTGCCTGGATATACCGGACACCTGTGTGAGCAAGcCTGCCCAATGGGCCGGTATGGACGCCATTGTAGCAATGTGTGCATGTGCACCAACAATGCTACATGTCATCACCAGGATGGTTTGTGCCTCTGTCCTGCTGGATGGACCGGACCAGACTGCTCTTTATTGTGTCAGACAGGGACGTTCGGCACTAACTGCGCTCAGACCTGCTCGTGTCCCCCCAACCATTCCTGCGACCCTCACACtggagactgtgtgtgtgtacctggacCGGGAGAGGACTGCAAACCAGagcaagAGCTGAGTATGATGGTGCCTGTGTCTCCGGTGGAGAAGGATTCGTGGGGTGCGATCGCAGGCATTGTGGTGCTGGTGATTCTGGTTGTGCTCCTGTTGTCTGTTCTGTTGTTATATCGGCGCAGACAGCAAGACAAACAGAGCAACACACCCGTTGTGTCTTTCTCTTCAACCCGCACAGTCAGTTCAGAGTACGCGGTGCCAGATGTTCCACACAGCTACCACCACTATTACTCAAACCCGAGTTACCACACACTGTCTCAGAACAGACCTCCACTGCCACACTTGCCCAACAACCAGGACCGAGCCATCAAGAACACCAACAACCAGTTGTTCTGCAGTCTGAAGAACAtggagagggagaggagaggtCTTTTTGCGGCTGACACTAATGCAACTCTTCCTCCAGGCTGGAAACACCAGGAGCCACCTAAAGATCCAGGGGCTTTTGGCATCGATCGAAGTTACAGCTATAGTGCTACTCTAGGGAAACACTACAACAAAGCGTTGAAGGATTCATGCGTGGCAGTGAGCAGCAGCTCTCTGAACAGTGAGAACCCATACGCTACCATCAAAGATCTGCCTGGCCTGCCACCGTGTCCTCCGGAGAGCAGCTACATGGAAATGAAGTCTGCAGTGCCTCGTGAAAGATCCTACACTGAAATCAGCCCACCGGTTATGACTTCCTCCACTCTGCCATGCAGagAACACTGTTCCCTTGGCAACGTTGTGGAACAGGAACCTCAGAATCATTATGATCTGCCCATCAACAGCCACATTCCTGGGCATTATGATCTGCCCCCAGTGCGGAGACCACCCTCTCCATCGCCACGAAGACTGCCCCACTGAACTGCTTAAAAAGACTCTGGTTCTTCCCAAAAATCACTGCCAAATACAGAGTCAGCTTTACAAACTGGATAATGAAACACTGCCCACcacagatgaatggatggacgCTACCAAAACTGCGCAATACTGCCATCTGCCGGACAACACTATTGAATGTTCATGGAGGATAAGATCACGATTAACCCCATTTAAGCCTGTGGATGTTGCCAAggactttatttcttttcttttctttcgaCAATATTTGTGGATGGCTAAACTACTGGCATACGAAAAGAAAAACCGTAGAAAAAGGAATTTCCACAACTTGCTGGATGTGATGTTGGAGCTTCAATGCTAAAATCTTTTCAACTATCACAAGTTGCTGTATCAAATCGTATTTGGAAAAACTGCAAAAGAACGGCACATATGCTCATATAAAAGACGTTAATAGAAAATCCGATCTGGGCATTAATGGgttaaatgctacatttttttctgtttttaaatgctattcATGTTTCTTATCTAATCTGGTTATCAGGGtgtaaataatgtcatttttaacagcTACAGAACACCTTTTCGTGTTTGTAACACTCAACATTGAGAACAGTTTTTTGGCTATGAATGTCAGTTGagttcaaccaatcagaattgtaaatagtgtaaataaaatcaaagttttCAAGCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168243 lncRNA upstream 23034 18133886 ~ 18136989 (+) True G113942
XR_006252752.1 lncRNA upstream 226546 17892970 ~ 17933477 (+) True LOC122359994
TU168168 lncRNA upstream 227142 17932501 ~ 17932881 (+) False LOC122359994
TU168161 lncRNA upstream 268304 17891227 ~ 17891719 (+) True G113882
TU168115 lncRNA upstream 388099 17754254 ~ 17771924 (+) False G113851
TU168255 lncRNA downstream 4440 18199250 ~ 18200429 (+) True G113954
TU168272 lncRNA downstream 89344 18284154 ~ 18284764 (+) True G113969
TU168298 lncRNA downstream 125935 18320745 ~ 18377641 (+) True G113988
TU168462 lncRNA downstream 321808 18516618 ~ 18622406 (+) True G114106
TU168457 lncRNA downstream 365404 18560214 ~ 18560969 (+) True G114103
XM_043262025.1 mRNA upstream 16044 18139916 ~ 18143979 (+) True tmem79b
XM_043260764.1 mRNA upstream 37597 17997797 ~ 18122426 (+) True sema6e
XM_043260262.1 mRNA upstream 277066 17879199 ~ 17882957 (+) True lysmd1
XM_043260259.1 mRNA upstream 284272 17870834 ~ 17875751 (+) True tmod4
XM_043260256.1 mRNA upstream 289081 17860939 ~ 17870942 (+) True vps72b
XM_043260410.1 mRNA downstream 26221 18221031 ~ 18221936 (+) True mc2r
XM_043260816.1 mRNA downstream 37234 18232044 ~ 18239325 (+) True fam210ab
XM_043261117.1 mRNA downstream 344453 18539263 ~ 18542637 (+) True scxb
XM_043260125.1 mRNA downstream 397458 18592268 ~ 18596824 (+) True ndrg1b
XM_043261419.1 mRNA downstream 414172 18608982 ~ 18612472 (+) True LOC122360632
TU168130 other upstream 312613 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 752827 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 758266 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1336045 16767060 ~ 16823978 (+) False sec61b
TU168498 other downstream 454581 18649391 ~ 18857430 (+) False G114131
TU168504 other downstream 484380 18679190 ~ 18680080 (+) False LOC122360853
TU168569 other downstream 563574 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 614344 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 632444 18827254 ~ 18840228 (+) False LOC122360132

Expression Profile