RNA id: TU168457


Basic Information

Item Value
RNA id TU168457
length 610
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G114103
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18560214 ~ 18560969 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTATCTTTGCAGGAACCcctgtaaaacattaaatgtaatattctaAGGTTTTCAGAAGGAACTCACAGAAGTAAGGGTGGTCCATGGCCTCGCGGGCTGTCAGTCGGGCCTGGTGGTCATAACGTAGCAGCTTATCCAGAAAATCCAGAGCCTCAGTACTGACCAGGTGCTGGTTCTCACTGTGCACAAACCGTTCCCATCTCTTCCTGGAGTGTCTGCCAAAATGTCATTAAAGCGTGGGTCCAGCTCAATGTTATATTTGTCGATGTAGTCATACAGGTCCTCTGTACCCAGAACCTTTGCAATTCGAACCAactagaaagaaaaataaatcacctcAGAAACTAAATTCAACAAACAAATACCCAGCATATTAAAACAagcaattatttgtttttgcaaatttgcACAgcaaatttatgaattaatcaGTTGAATGACTGAACATACctgctatttgtttttaataagtctgttcatgtttaaaaaaaataaataaataaacattatataaccTGATCATAGTTGTCATGTCCATGGAAAAATGGTTCCTTCCTGAAGATCATACTGGCCAGCATGCATCCAAGACTCCACATATCCAAACTGTA

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05323 Rheumatoid arthritis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168298 lncRNA upstream 182573 18320745 ~ 18377641 (+) True G113988
TU168272 lncRNA upstream 275450 18284154 ~ 18284764 (+) True G113969
TU168255 lncRNA upstream 359785 18199250 ~ 18200429 (+) True G113954
TU168243 lncRNA upstream 423225 18133886 ~ 18136989 (+) True G113942
TU168168 lncRNA upstream 627333 17932501 ~ 17932881 (+) False LOC122359994
TU168458 lncRNA downstream 311 18561280 ~ 18561911 (+) True G114104
TU168496 lncRNA downstream 87576 18648545 ~ 18650575 (+) True G114131
TU168494 lncRNA downstream 88422 18649391 ~ 18650575 (+) False G114131
TU168495 lncRNA downstream 88422 18649391 ~ 18650575 (+) False G114131
TU168497 lncRNA downstream 88422 18649391 ~ 18650575 (+) False G114131
XM_043261117.1 mRNA upstream 17577 18539263 ~ 18542637 (+) True scxb
XM_043260816.1 mRNA upstream 320889 18232044 ~ 18239325 (+) True fam210ab
XM_043260410.1 mRNA upstream 338278 18221031 ~ 18221936 (+) True mc2r
XM_043261631.1 mRNA upstream 365404 18160023 ~ 18194810 (+) False pear1
XM_043261630.1 mRNA upstream 365404 18160024 ~ 18194810 (+) True pear1
XM_043260125.1 mRNA downstream 31299 18592268 ~ 18596824 (+) True ndrg1b
XM_043261419.1 mRNA downstream 48013 18608982 ~ 18612472 (+) True LOC122360632
XM_043260271.1 mRNA downstream 110990 18671959 ~ 18673711 (+) True LOC122360004
XM_043261701.1 mRNA downstream 114591 18675560 ~ 18680093 (+) True LOC122360853
XM_043261626.1 mRNA downstream 122350 18683319 ~ 18684515 (+) True LOC122360773
TU168130 other upstream 712804 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1153018 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1158457 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1736236 16767060 ~ 16823978 (+) False sec61b
TU168498 other downstream 88422 18649391 ~ 18857430 (+) False G114131
TU168504 other downstream 118221 18679190 ~ 18680080 (+) False LOC122360853
TU168569 other downstream 197415 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 248185 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 266285 18827254 ~ 18840228 (+) False LOC122360132

Expression Profile