RNA id: TU168496


Basic Information

Item Value
RNA id TU168496
length 1726
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G114131
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18648545 ~ 18857430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTGTCAGTCAACAAAATGAATTgctatgtaaagaaaaatacatttactttgtAAATGCTTGTAGCCTGCATGAAGTGCAAATGATGATAAATGCTGTTGACACAAAGTGCATGGGATAATAGGTGAGGTAGGGTGTAGTAAGTGTAATTATTAGTCAGGGTCTATTTAGACAACCTGTTTGGCAAacttatttgattatttaatattatctaTCCACCTTTGTTCagatatttcagtttcagtacAAACAACACATCACTTctagacaaaatatatttatatatttaaaatatatattttatatagtaccgttatttaacaatgtttttagCTCAACAAACAAAATCTTTACGCTTCAATCCTAAGAGTTTGTCATAGGTCTACACAAGTAAAGAATTTCtaaatttgtgttgttttgctgGCAAATGGAAAGATGGAAAGTGAAGTAAAGGTGTACAAAAAGCATTCAAGCATGCAGGCgagtaataatacattaaaatgttggaGCAAAATATACTATTCTACCTATAACTAAAcatattttgcaacattttctttagaattttaataatactaaagaTATTATGTATTATACTAGGTGTCAGCTTGATCAACTTTTTTTAACCCAACCAGTCTAGTCACAATGATAGTGTCCAAACTGTATTTGAAATCAGTATGAAATATAACGTAAGCAAAAAACCTCTGTTCTACAGCTTAATCACCTACAGCTGGTTAATCTAATATACAGCTATAACACACTTTCATTTGAGAGTTCATATTTCATTAGTTTTGATAGTCATCTAAATTCCAAAACATTACTAATATTCAATCAATTTAAacaccaaaaatatttaataaacacagcAGTGTAACAGTAAAGAATGCATTAtcatgtgtatttaaaaaacaaacggATTAGTGATGCTTTCttcacatataacatataaaataattgtcgTGAATTTAACCATCCATCATCCTGCCAGCTGCATCATGGCAGTTATCAAACAAAAGTTTGTAGTCTGTTCCTCCAGCTTTAACAAAGTCAGACACTGTCTTGCTCCCACCAAAATTTTTTGTCTCAACCTTCCAGTTATTGGCCATATGACGGGCAGCCACAACAACAGTTTGGGATGAGATGCCATAGCCGTCTCCTTTATGGACCAGCCATTTAGAGCCGTCTGCTATAGTCACTCTAAAAGTAAAACCACCGGACAAAATGCATTAGATTCAAAACACTCACTCATTCAAACGTGATGTATTCACTATGATGaatacaacacaaaataaatgaaatgaaagaaaaaaatgtggatCACATCTTGATGTATACCTGACTCCAGAGTGGCTAAGTTTGCCTATTTGGAATGACATCCCCTCTAGAGGCCTGGTCATCCTCTCTGCCTTAAATACTTTGGAGTTGTATAGCTTCGTCAGATCAGACATTTTGGAAATGTCATAACTGTAAGAGTTTCcGTACCGTTGCCCCATGAGGATTCAGCCACCATGGCCACCATGGCCAGGAGAAGTAGACCCAGTGCAGTCTTGAAGGACATCATGATTTACAGCAAACTAAAGCTTCTGTGTCTGAGGGTTTGTCTCAGAGCTCTTTTTTATACTGTTCTGAGTCTGTGATCTTCCCCTTTTTCGAAATGCGTGCTTTACTGCTGAGGTCAACTGAACAAACACGGCATGTCCAGGCAAAGTTTTTGGGAAAGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168462 lncRNA upstream 26139 18516618 ~ 18622406 (+) True G114106
TU168458 lncRNA upstream 86634 18561280 ~ 18561911 (+) True G114104
TU168457 lncRNA upstream 87576 18560214 ~ 18560969 (+) True G114103
TU168298 lncRNA upstream 270904 18320745 ~ 18377641 (+) True G113988
TU168272 lncRNA upstream 363781 18284154 ~ 18284764 (+) True G113969
XR_006252834.1 lncRNA downstream 198 18650773 ~ 18653605 (+) True LOC122360728
TU168546 lncRNA downstream 13253 18663828 ~ 18664762 (+) True G114172
TU168547 lncRNA downstream 13398 18663973 ~ 18664762 (+) False G114172
TU168550 lncRNA downstream 17270 18667845 ~ 18669187 (+) True G114175
TU168501 lncRNA downstream 116043 18766618 ~ 18888286 (+) True G114132
XM_043261419.1 mRNA upstream 36073 18608982 ~ 18612472 (+) True LOC122360632
XM_043260125.1 mRNA upstream 51721 18592268 ~ 18596824 (+) True ndrg1b
XM_043261117.1 mRNA upstream 105908 18539263 ~ 18542637 (+) True scxb
XM_043260816.1 mRNA upstream 409220 18232044 ~ 18239325 (+) True fam210ab
XM_043260410.1 mRNA upstream 426609 18221031 ~ 18221936 (+) True mc2r
XM_043260271.1 mRNA downstream 21384 18671959 ~ 18673711 (+) True LOC122360004
XM_043261701.1 mRNA downstream 24985 18675560 ~ 18680093 (+) True LOC122360853
XM_043261626.1 mRNA downstream 32744 18683319 ~ 18684515 (+) True LOC122360773
XM_043260648.1 mRNA downstream 53828 18704403 ~ 18751686 (+) True LOC122360227
XM_043260647.1 mRNA downstream 65578 18716153 ~ 18746824 (+) False LOC122360227
TU168130 other upstream 801135 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1241349 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1246788 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1824567 16767060 ~ 16823978 (+) False sec61b
TU168504 other downstream 28615 18679190 ~ 18680080 (+) False LOC122360853
TU168569 other downstream 107809 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 158579 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 176679 18827254 ~ 18840228 (+) False LOC122360132
TU168814 other downstream 547229 19197804 ~ 19253046 (+) True G114352

Expression Profile