RNA id: XM_043261117.1


Basic Information

Item Value
RNA id XM_043261117.1
length 1429
RNA type mRNA
GC content 0.47
exon number 2
gene id scxb
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18539263 ~ 18542637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcattcacacacacgtCTGGGAGGCGACTTGGCATGCTGTGAGCCCAAATAACCGATGACAGTCGAGAAAAGAGCATTTCTTATGAATGAGCGAGTCAGAAGTGACTCGGTCAAGCATCGCTGGATTGGTTGGATCCCTAAAGCCAGACTGGTTACAGAAGCTAGTCACTTCGCATGCAGACCATAGACTGTGATGTGCGATTAGAAATTGGGATCGAGTTCACTGCAGTGTTTGCTCAAAGTAGAACGATCCAACAGAGATCTCCGTGCAAGGACAAAAAGCAAAGTCCAGGGGGCCTGTAGGGTGCTGAGCATGTCTTTTGCGATGGTGCGACCAACCCCAGGTCATTTCTTGTGCTCTGAGATCACCATGCACTCTGAGGATGACGACAACGGCAGTGAAGGTTCTGGATCTGACGACAAGTCCTTCCGAATGGCCGGCCACGACTACGGCGCATTTAAGTTGGGCGCTCGCAAAAAGAGGTACGGCTGTCGACCGGTTGCAGCTCCCAGCGAACTCCGTCCTCAGATCGTCGAGATACGGCAGAGGAACGCCGCAAACGCCCGAGAGCGGGATCGCACGAACAGTGTGAACACGGCGTTCACCGCGCTGAGGACGCTTATACCCACCGAACCGGCGGACAGGAAGCTGTCTAAGATTGAGACGCTGCGGTTGGCCTCCAGCTACATCTCGCACCTGGGGAACGTGCTGCTGGTTGGAGAGGAGTGTGGAGACGGCCAGCCTTGTCTCAGGAGCTCGGGAGCCTTGTATCATCACCTCCACAACCTTCCAAAGACCTCGACACCCAGCCCGGATTCAGAAAACTCACAGCCCAGACAGATCTGCACATTCTGCCTTGGTAACCAGAGACGGCTGaacaaagacagagaaagaaaaactgcaTTAAGAAGTTaatgatgagcagaagagagtGTTTCCATCACATCCATCTGAAGAAGAGTTGAGCCGGAGCGTACTGAACATTTAGTGTACTTTTGCTGTAAATAAGCTGTTAAATTGAATGCAACTTTTTAACCAACTTACTGGTGGACAATGTCATAATGGACACTGCATTCCGCACTTCCATATTTAGAAGCCAAAACCTAtgtgaatttcatttttgaacctcttttttgttttatatagaGGTGATATACTTTTATAGAAAAGTTCTAGGGAggatttgcaatttaaaaaacaaaaagaaaaaaaaaatggaggaaaaaaaggaCTTGCTTGTTAACCAGCAAAGAACCTGTTTGTGTCCTTTTGGGTTTGTCTGTGATGCGTATGTTTTGTATGCACTACACTGaactttatttacaaatgtcGAAACATGGGCTTTTTTCCTATCAGAACACATTACCTACAGTACAATCGAACTTCAATGTCAAGGAGTTGCTGGTTATTCTGTCAcgattattgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168298 lncRNA upstream 161622 18320745 ~ 18377641 (+) True G113988
TU168272 lncRNA upstream 254499 18284154 ~ 18284764 (+) True G113969
TU168255 lncRNA upstream 338834 18199250 ~ 18200429 (+) True G113954
TU168243 lncRNA upstream 402274 18133886 ~ 18136989 (+) True G113942
XR_006252752.1 lncRNA upstream 605786 17892970 ~ 17933477 (+) True LOC122359994
TU168457 lncRNA downstream 17577 18560214 ~ 18560969 (+) True G114103
TU168458 lncRNA downstream 18643 18561280 ~ 18561911 (+) True G114104
TU168496 lncRNA downstream 105908 18648545 ~ 18650575 (+) True G114131
TU168494 lncRNA downstream 106754 18649391 ~ 18650575 (+) False G114131
TU168495 lncRNA downstream 106754 18649391 ~ 18650575 (+) False G114131
XM_043260816.1 mRNA upstream 299938 18232044 ~ 18239325 (+) True fam210ab
XM_043260410.1 mRNA upstream 317327 18221031 ~ 18221936 (+) True mc2r
XM_043261631.1 mRNA upstream 344453 18160023 ~ 18194810 (+) False pear1
XM_043261630.1 mRNA upstream 344453 18160024 ~ 18194810 (+) True pear1
XM_043262025.1 mRNA upstream 395284 18139916 ~ 18143979 (+) True tmem79b
XM_043260125.1 mRNA downstream 49631 18592268 ~ 18596824 (+) True ndrg1b
XM_043261419.1 mRNA downstream 66345 18608982 ~ 18612472 (+) True LOC122360632
XM_043260271.1 mRNA downstream 129322 18671959 ~ 18673711 (+) True LOC122360004
XM_043261701.1 mRNA downstream 132923 18675560 ~ 18680093 (+) True LOC122360853
XM_043261626.1 mRNA downstream 140682 18683319 ~ 18684515 (+) True LOC122360773
TU168130 other upstream 691853 17841817 ~ 17847410 (+) True ensab
TU167860 other upstream 1132067 17400334 ~ 17407196 (+) True acbd7
TU167859 other upstream 1137506 17400334 ~ 17401757 (+) False acbd7
TU167461 other upstream 1715285 16767060 ~ 16823978 (+) False sec61b
TU168498 other downstream 106754 18649391 ~ 18857430 (+) False G114131
TU168504 other downstream 136553 18679190 ~ 18680080 (+) False LOC122360853
TU168569 other downstream 215747 18758384 ~ 18760902 (+) False LOC122359904
TU168577 other downstream 266517 18809154 ~ 18821136 (+) True LOC122360692
TU168594 other downstream 284617 18827254 ~ 18840228 (+) False LOC122360132

Expression Profile