LOC122360132


Basic Information

Item Value
gene id LOC122360132
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18827254 ~ 18841584 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168594
ATCTGACCAAACAGCGGTGGACGCAAAGCTGACCAGCTCGCGGCCATCCAACTGTTTCAGCAGGGCAGCCCAGAGCCAAGGACACCTTGccatgacacaaaaaaaaaacaaatggagaGACAACTGTCCCTCAGGTCAGAACAGGTGCTGCGGGACAGGCCAGAGTCTGCCGGGACAGCTGTACTATTCCTGTCCGGAACAGAGCCGGCTGACTGCGGATCCACAGAGACTAATGACAGATGGACAGATTTATTCACTCCGATGAGCAAtttccacacatacacacagactcGTGGAAAAACACCGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACGTGACTGCGACCTCACACATCCGGGTCAGTGCATCCGAGCAGGGGAACAAAGGCAGAGCTGGTCCCAGAATGTGAGTTCCCAATTACCCTTGAGTGAGATCCACGGAGCAGAATGCTGCAGGTGAGAAGTTGGATGGGGCCTCTGTGATGGGCTGGCAGAGACACAATCGACCTCTGTGGCACCGGCTTGGAATCGCTGCGTGCCTGCGATGAAAAATGCTGAGGGCACAACACAAAACAGCACACAGACTAATGAATTCAGTGCATGTGTAATTTATGACAAGCAGAAGGCTCCTTCATTTTTTCCGGTGTGAAGCTGCATGCTACTTTAATGTGAAATGCGGCAAATTAAATACGTATTTAAGAGCCGGCTATCAAGAGGCATGTGTCACGTGAGGTCTTTGACCCACATAACAGatactaatataatttttttttttttcatatgggcgatgaaaggaaatgttttaaagaatatttgaGAGTTCATGGTGACTGTTGTCATCAACTtccaaa
>XR_006252770.1
ATCTGACCAAACAGCGGTGGACGCAAAGCTGACCAGCTCGCGGCCATCCAACTGTTTCAGCAGGGCAGCCCAGAGCCAAGGACACCTTGccatgacacaaaaaaaaaacaaatggagaGACAACTGTCCCTCAGGTCAGAACAGGTGCTGCGGGACAGGCCAGAGTCTGCCGGGACAGCTGTACTATTCCTGTCCGGAACAGAGCCGGCTGACTGCGGATCCACAGAGACTAATGACAGATGGACAGGTGGGGGAGCCCTCGAACGGCCCGGAGATTTCTGCTTTATACCGCAAGATAATGGCGGAATTTATTCACTCCGATGAGCAAtttccacacatacacacagactcGTGGAAAAACACCGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACGTGACTGCGACCTCACACATCCGGGTCAGTGCATCCGAGCAGGGGAACAAAGGCAGAGCTGGTCCCAGAATGTGAGTTCCCAATTACCCTTGAGTGAGATCCACGGAGCAGAATGCTGCAGGTGAGAAGTTGGATGGGGCCTCTGTGATGGGCTGGCAGAGACACAATCGACCTCTGTGGCACCGGCTTGGAATCGCTGCGTGCCTGCGATGAAAAATGCTGAGGGCACAACACAAAACAGCACACAGACTAATGAATTCAGTGCATGTGTAATTTATGACAAGCAGAAGGCTCCTTCATTTTTTCCGGTGTGAAGCTGCATGCTACTTTAATGTGAAATGCGGCAAATTAAATACGTATTTAAGAGCCGGCTATCAAGAGGCATGTGTCACGTGAGGTCTTTGACCCACATAACAGatactaatataatttttttttttttcatatgggcgatgaaaggaaatgttttaaagaatatttgaGAGTTCATGGTGACTGTTGTCATCAACTtccaaaaagataaaaaaatctaaagaaactTTATAAAGCACAGaattttctaatatataaagtatttttttatatatttttttaacaaattgttACATTTGTGGTGTCAAAAATTACTggcctttttattgttttctttcagttatcacaggttttgtatttctttgaTTGATTATCAAAGGCCTAATTTATCTGAGCTAATGCCCCTCAGTTTTTCAGTACATATTGCCAAAATAATGCACAAATGTGTAGggtttttttcacttaaaaccTGAGATTCTTAAACGTAGACCAATGGGATCTACAGTCACTTCCAAATATACAGAAGTACATAACCTGTGGTAAATGAAAGAGAAGTCGACAAGTTAATTGAcaattaaataagcaaataaaatacttaGTTATAACTGAGTACTAACCAAGGAGCAGATAAGTCATTATACAGATAAGCATTtcagatctttttttgtttatgtcagattcaaaaaaagtgcatttgtacATCAAAATAGTCAGCATCACCTACCGGTgttattttttgtgctttttcaaaCATATCCCTCAAGTTTGGcgtgaactgttgctttaaaaatcaGTTAAGTAAACATATTAATTGATCAAAACTTGTCAGACAAACACAGCATGCAGTGGCAGATGTTGTCAATTGTCAAAGTGAACGCGATAGGAAATTTGCCTAAAGGCCACGAGGACTGAATGCTGTATCTCATCTCAACACGTTCCCTTTCTGTTAACAGTTCAATGGCATGTCATCTCTGCAACAATTACCCTGTCCTTACTGTACCGGATAACTCGATAGAATATGACTGTGATCTAATGTAGTAGGTCCATCAGTGCTGGTGTAATGAGAGTGGAGTTCACACAGAGATCAGGAATCAATGTTCAGCTCTGCAAAGGGCATATAGAGTTTGTTAGTGATGTTCATGAAAAACTCAAATGAAGTTATAAACATtctctgcaaaaaaacattccaaaagtccaaaagccttaaaataaattaaataaattaatatggattaaataatatataataataataataataataataatattaataatatttataacgTTTTTAGATAATTTATTAACTCGGTCGCTGTGTATTTTGACACAATAACTACAAGGCTATTGACAGCAAcgtaattatttaatgtaataattgatttaatattaaattaaataataatttagataatttgtatatacatttaaaaaaacattttgacacaaaattaagttaaaatttaGATATCTTTAATAAATTTCTTTTAGAGCATCATTCTTTAACataaaattgataataataattttgatcatattttacatggtataatttgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168594 False 858 TUCP 0.49 3 18827254 18840228
XR_006252770.1 True 2273 lncRNA 0.37 3 18827254 18841584

Neighbor

gene id symbol gene type direction distance location
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding upstream 47871 18762264 ~ 18779383 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding upstream 75568 18704403 ~ 18751686 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding upstream 142739 18683319 ~ 18684515 (+)
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding upstream 153543 18671959 ~ 18673711 (+)
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding upstream 214782 18608982 ~ 18612472 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding downstream 140505 18982089 ~ 18983105 (+)
LOC122360015 apoa2,LOC107592541,LOC107726689,LOC107688286,LOC107592191,LOC107728486,LOC107726687 coding downstream 143326 18984910 ~ 18986011 (+)
LOC122360019 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 coding downstream 160967 19002551 ~ 19013239 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding downstream 187482 19029066 ~ 19052616 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding downstream 372902 19214486 ~ 19240639 (+)
LOC122360693 NA non-coding upstream 1866 18821517 ~ 18825388 (+)
G114175 NA non-coding upstream 158067 18667845 ~ 18669187 (+)
G114172 NA non-coding upstream 162492 18663828 ~ 18664762 (+)
LOC122360728 NA non-coding upstream 173649 18650773 ~ 18653605 (+)
G114104 NA non-coding upstream 265343 18561280 ~ 18561911 (+)
G114299 NA non-coding downstream 135967 18977551 ~ 18979872 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding downstream 227018 19068602 ~ 19112727 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding downstream 254146 19095730 ~ 19156067 (+)
G114354 NA non-coding downstream 360810 19202394 ~ 19205964 (+)
G114345 NA non-coding downstream 404349 19245933 ~ 19248320 (+)
LOC122360692 NA other upstream 6118 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 65483 18758305 ~ 18761771 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other upstream 147161 18675560 ~ 18680093 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 979844 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 1089772 17732604 ~ 17737482 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 356220 19197804 ~ 19253046 (+)
fxyd11 NA other downstream 438799 19280383 ~ 19283515 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other downstream 442177 19283761 ~ 19292881 (+)
G114382 NA other downstream 485520 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 802245 19643829 ~ 19647806 (+)

Expression


Co-expression Network