G116445 (ubr5)


Basic Information

Item Value
gene id G116445
gene name ubr5
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26841380 ~ 26842025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171947
GCTGGACTGATCCGGGGAGGGTCGCGGCGGCAGGGGCTCCACAGAGAAGAGCTCCTCGCTGCCCTGAACGGCGTCGATGCTGGTACTGGCCAGGGTGAAGGGCGCTGTGGGGCGAGCGATGCCCATCCGCACCGGCACGATCAGGGACTCGGCCACGTTGCAGAGCTCTTCTACTGCGTACGGCAACAGAGCCTGAAAAACACGCCTGCACTTCCCGATGGGCTGCGGGATGAAGTTACTAGAGGAAaaacgagagaaagagaaagagacagagagagagacagagagagagagagagacagagagagagagagacagagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagacagagacagagagagacagagagagagagagagagagagagagagagagagagacagagagacagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagagagagag

Function

symbol description
ubr5 Predicted to enable several functions, including ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in several processes, including negative regulation of histone H2A K63-linked ubiquitination; protein polyubiquitination; and regulation of double-strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human UBR5 (ubiquitin protein ligase E3 component n-recognin 5).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171947 True 596 TUCP 0.55 2 26841380 26842025

Neighbor

gene id symbol gene type direction distance location
srsf10a srsf10a,srsf10b,LOC107724996,LOC107677658,LOC107601991,LOC107659087,LOC107729809 coding upstream 20163 26813702 ~ 26821217 (+)
fabp10a fabp10a,LOC107677662,LOC107601978,LOC107659084,LOC103026354 coding upstream 29184 26810797 ~ 26812196 (+)
myom3 LOC107729819,LOC107665907 coding upstream 33616 26745002 ~ 26807764 (+)
ifnlr1 NA coding upstream 102667 26726225 ~ 26738713 (+)
LOC122360976 man1c1,LOC107564091,LOC101882461,LOC108426368,LOC106605146,LOC105006133 coding upstream 162474 26388953 ~ 26678906 (+)
klf10 LOC107724995 coding downstream 29854 26871879 ~ 26878611 (+)
LOC122360881 NA coding downstream 216222 27058247 ~ 27069367 (+)
LOC122360882 LOC107720478,LOC107551709 coding downstream 263578 27105603 ~ 27110988 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068 coding downstream 415955 27257980 ~ 27265824 (+)
nkd2b LOC107754446 coding downstream 426957 27268982 ~ 27306063 (+)
G116437 NA non-coding upstream 12511 26828089 ~ 26828869 (+)
G116407 NA non-coding upstream 359566 26421704 ~ 26481814 (+)
G116403 NA non-coding upstream 453914 26387216 ~ 26387466 (+)
G116402 NA non-coding upstream 454185 26386798 ~ 26387195 (+)
G116401 NA non-coding upstream 455532 26385611 ~ 26385848 (+)
G116456 NA non-coding downstream 43436 26885461 ~ 26886564 (+)
G116461 NA non-coding downstream 85205 26927230 ~ 26958275 (+)
G116462 NA non-coding downstream 116956 26958981 ~ 26961403 (+)
G116432 azin1a,LOC107565755,LOC107677651,LOC107659088,LOC107729815,LOC107735878 non-coding downstream 137079 26979104 ~ 26981744 (+)
G116431 NA non-coding downstream 153912 26995937 ~ 26997644 (+)
hmgn2 NA other upstream 625601 26212732 ~ 26215779 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other upstream 1062973 25718520 ~ 25778407 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other upstream 1286573 25552863 ~ 25554807 (+)
G116057 NA other upstream 1784212 25003262 ~ 25057168 (+)
LOC122360598 NA other upstream 2008762 24773819 ~ 24832618 (+)
G116459 LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165 other downstream 53413 26895438 ~ 27171468 (+)
cep72 spire1,LOC107677663,LOC107659090,LOC107729800,LOC107565753,LOC107601988 other downstream 320176 27162201 ~ 27213635 (+)
G116460 NA other downstream 321811 27163836 ~ 27168738 (+)
kif13a kif13a,LOC107677640,LOC107601961 other downstream 566052 27408077 ~ 27463052 (+)
G116572 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422 other downstream 990515 27832540 ~ 27840240 (+)

Expression


Co-expression Network