G116633


Basic Information

Item Value
gene id G116633
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26620290 ~ 26678901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172267
GTGCACtcgtttttaaatgtataaatcgCACAGATCTTTTACCagtatttgaaaatattcaacAATGAGAGACAGAAGACGTTCAAATTAACAATGATCGGCACTACCGTAATGAATAGTGCAAATAACTGTAATCAAAACTTGTACAGAAACACCTGAGGAAAACCAAAAGAGCGAGTCTTTCATAAACATCCATAAAAattagaaaagagaaagagagagaaaacaggaaCAATTAATGACATGAATCACTCACATTCATTCCACCGTTACTGTCTGACGCTGTCGCTTCGGGGACAAAAACcccagaaaaaaacattcacattcacCATCGATGCTTTGAGACGACTGCGGCGACAGGGCTGGGCGACACGGAGAATTGACTGTATCGTGAACTGCAATATTAACCTACAGATAGGTCTACTAAAAcgaaataaaacacttttttaactTCGTTTCAGGGTTTTGACTCATCTGAACTGATTCATGGAAATGAATCAAACTTAAGTGGCGCGTTTGAAACTAGAAACTAGTCTGATGATGCAAAACTTGATTCAAATAATTGCATGATTCgcaaaatctgttttgattcGTGTAGGTGACTTAAACTTAAACGCTGTGgaaaaatgatgaaattatgTCTTTGGGGACATATAACGAACGCATTACAAAAAGAATTCAAATAACTATATGATTCACAATCTGACGGTTGATTCGATTTGGATTCGATCGCACCTTTGGTGTTTTGAATCAATTAATACAagcgttttttcttttttagagaCTGAATTAATTTGATACTCAATGACGAAACTTAACtgagcacatttaaaaagcGCATTCAAACAATTATGCGAATGAGCTTTGAATCCATTCACTGAAACGAACAGTTCGAATCGATTCATGGAAAGGAATCAAACGGCTGTTTTTGACACTGAAGAAGAATCATGCCACTATTTTAAGTCAATCTTTATGAAACCTaacgaatgaataaaaaaagcactttataataatagtttaattcgtaatctttttgtttttgaattaattcactgaatcatttttaaGCGAGTTGCAGAAATGGATCAAATTTAATTGCTATTTCCGATACTGAATAGTCCGATTAACGAGCATTAAAATAACGGTGATTCACAATTGCTAGCGTTTCTGAACCGAGCTTTTCTGAAGCGATTCGTCAAAAACACAGTTCGAAAAGGCATTCATGGAAATGAATCAAACGTGAATCAAACCGAAGAA
>TU172268
GTGCACtcgtttttaaatgtataaatcgCACAGATCTTTTACCagtatttgaaaatattcaacAATGAGAGACAGAAGACGTTCAAATTAACAATGATCGGCACTACCGTAATGAATAGTGCAAATAACTGTAATCAAAACTTGTACAGAAACACCTGAGGAAAACCAAAAGAGCGAGTCTTTCATAAACATCCATAAAAattagaaaagagaaagagagagaaaacaggaaCAATTAATGACATGAATCACTCACATTCATTCCACCGTTACTGTCTGACGCTGTCGCTTCGGGGACAAAAACcccagaaaaaaacattcacattcacCATCGATGCTTTGAGACGACTGCGGCGACAGGGCTGGGCGACACGGAGAATTGACTGTATCGTGAACTGCAATATTAACCTACAGATAGGTCTACTAAAAcgaaataaaacacttttttaactTCGTTTCAGGGTTTTGACTCATCTGAACTGATTCATGGAAATGAATCAAACTTAAGTGGCGCGTTTGAAACTAGAAACTAGTCTGATGATGCAAAACTTGATTCAAATAATTGCATGATTCgcaaaatctgttttgattcGTGTAGGTGACTTAAACTTAAACGCTGTGgaaaaatgatgaaattatgTCTTTGGGGACATATAACGAACGCATTACAAAAAGAATTCAAATAACTATATGATTCACAATCTGACGGTTGATTCGATTTGGATTCGATCGCACCTTTGGTGTTTTGAATCAATTAATACAagcgttttttcttttttagagaCTGAATTAATTTGATACTCAATGACGAAACTTAACtgagcacatttaaaaagcGCATTCAAACAATTATGCGAATGAGCTTTGAATCCATTCACTGAAACGAACAGTTCGAATCGATTCATGGAAAGGAATCAAACGGCTGTTTTTGACACTGAAGAAGAATCATGCCACTATTTTAAGTCAATCTTTATGAAACCTaacgaatgaataaaaaaagcactttataataatagtttaattcgtaatctttttgtttttgaattaattcactgaatcatttttaaGCGAGTTGCAGAAATGGATCAAATTTAATTGCTATTTCCGATACTGAATAGTCCGATTAACGAGCATTAAAATAACGGTGATTCACAATTGCTAGCGTTTCTGAACCGAGCTTTTCTGAAGCGATTCGTCAAAAACACAGTTCGAAAAGGCATTCATGGAAATGAATCAAACGTGAATCGTGTTTTTGAAACCGAAGAACCGCCACGAGACCAGTCTgacttaaaaatgaacattaaaataattgcgTGCAATTCGCTGcgaaaatataatgaattttcGGTATTTAATCGCCCAGCCCTAGTGGCCGTCCGCCGTCAGTGCAAGTGAGTTTTTCCGCTCTGGTGATGCTGGTCTTTGAAACATGGCATGTCGTGCACAACACCGAGGCTCACAATGCAGTcgaagcataaaaaaataccagtttaagtttaaaatcACGTAAAACAATCCTGCCCTGCCAACGACATCTCTCAAACCGAAGGATTCTGTACAACGCATTTCACAAAGGATCCTTTTGTCGGGTTTGTAAATACCCCAGTCCttggaaataatcaaaaaaaaaataaaaaaatcatagcaCGAAATTGGACTCGAAACTAGATAGAACAAAATATCAGGGTGCTGGgagagaaaaggaaataaaaaagacCGCAAACGCTTTGGCAGAAGAGACGGGAAAGGAATACACaatgaaaggatgaaagaaaaagataaattacAGGTGAGACGTGAAGAAAAGTGGTTTTCTCTTTCGCTCAGCGTGGCCCGCCGTCGTACGGCTCTCCTCCCACGGACTCGGGGCTGCAAGTtattctggggttttttttttcctcacagaggaaagaagcaaagaaaaaaaggtgcTCTTCTCATGAAAGTCACGTTTCACTGATTGTCCACGGAAAACTGCGCCGGAGAGCGGGAAACCTCGGCTCAGAGATATACAATCACAgcgtatatttatatatatgaagagaTCCTTTACAGGAAAGGAGCTGAGAATCCGTATCGGGACCCGTGAGGTTGaatccctgtgtgtgtgtgtgtgtgtgtgtctaaAGACTACTCCGGGTCGGTCTGTCCGTGGTCTGGTGTGACGCTGTGCTCCTGCAGGCATCTCTTGCGTATAACGGGCAGCGGATGAGCTTCTGTGTTGAACACCCAGTCCTCCAGCGGCAGGAGATCATCGTCCGAGAACAGCAGGTACAGGT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU172267 False 1257 lncRNA 0.35 2 26620290 26678901
TU172268 True 2279 lncRNA 0.40 2 26676598 26678901

Neighbor

gene id symbol gene type direction distance location
fam110d si:ch211-107n13.1,LOC107688188,LOC107707635,LOC107726719,LOC107564093,LOC107552531,LOC107671482 coding downstream 305445 26299517 ~ 26314845 (-)
LOC122360092 LOC107688189,LOC107564095,LOC107707648,LOC107671448,LOC107552527,LOC107726716,LOC107552528,LOC107671449 coding downstream 346599 26270993 ~ 26273691 (-)
LOC122360606 LOC107552511,LOC107671451,LOC107707651,LOC107688191,LOC107552530 coding downstream 350145 26267933 ~ 26270145 (-)
LOC122360603 LOC107707651,LOC107688191,LOC107552530,LOC107552511,LOC107671451,LOC107564104 coding downstream 352941 26264744 ~ 26267349 (-)
LOC122360602 LOC107726716,LOC107707650,LOC107552528,LOC107688189,LOC107564095,LOC107707648,LOC107552525,LOC107671450 coding downstream 356657 26259976 ~ 26263633 (-)
ubr5 ubr5,LOC107677650,LOC107659085 coding upstream 143256 26822157 ~ 26868971 (-)
LOC122360494 LOC107677651,LOC107565755,LOC107729815,LOC107601969 coding upstream 199770 26878671 ~ 26888899 (-)
LOC122361111 atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997 coding upstream 278740 26957641 ~ 26969940 (-)
LOC122361113 NA coding upstream 396603 27075504 ~ 27078615 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding upstream 501736 27180637 ~ 27204293 (-)
G116611 NA non-coding downstream 234283 26385798 ~ 26386007 (-)
G116368 NA non-coding downstream 337433 26105017 ~ 26282857 (-)
G116360 NA non-coding downstream 489484 26130280 ~ 26130806 (-)
G116359 NA non-coding downstream 491664 26071160 ~ 26128626 (-)
G116351 NA non-coding downstream 547284 26020525 ~ 26073006 (-)
G116647 NA non-coding upstream 60204 26739105 ~ 26739861 (-)
G116648 NA non-coding upstream 62675 26741576 ~ 26743789 (-)
G116670 srsf10a,srsf10b,LOC107724996,LOC107677658,LOC107729809,LOC107659087 non-coding upstream 137219 26816120 ~ 26818848 (-)
G116666 NA non-coding upstream 138131 26817032 ~ 26874360 (-)
G116696 NA non-coding upstream 474445 27153346 ~ 27213613 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other downstream 113238 26421718 ~ 26507052 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other downstream 236103 26379672 ~ 26384187 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other downstream 909604 25664719 ~ 25710686 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 2146925 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 2250724 24364640 ~ 24369566 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 128219 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 131416 26810317 ~ 26812974 (-)
G116668 NA other upstream 195497 26874398 ~ 26876610 (-)
G116677 NA other upstream 275319 26954220 ~ 26955834 (-)
LOC122360878 NA other upstream 315073 26993974 ~ 26998359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G299354 NA non-coding CI01000086 null 1644013 ~ 1646512 (-)