G299354


Basic Information

Item Value
gene id G299354
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1644013 ~ 1646512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339838
TGCACTCATTTTAAATGTATAAATCGCACAGATCTTTTACCAGTATTTGAAAATATTCAACAATGAGAGACAGAAGACATTAAACTCAACAATGATCAGCACTACCGTAATGAACAGTGCAAATAACTGTAATCAAAACTTGTACAGAAACACCTGAGGAAAATGAAAAGAACGAGTCTTTCATAAATGTCCATAAAAATTAGAAAAGAGAGAGAAAATAGGAACAATTAATGACGTGAATCACGCACATTCATCATGTAAAGACTCATTCCACCATTATTGTGTCGGATGGCGTTGCTTTGGGGACAAAAACCCCGGGAAAAAAAACTTCACATTCACCATCGATGCTTTGAGACGACTGTGGCCGATAGGGCTGGGCTATAGTGCTAAAAACACACGCAATTTCACATCTTTTTTGTGGGGGAAATCTGCAGGACTGATTTAATCAAGATGTGTTAAACTGATGTGTTACTCACAGCTGAATCATTTTCATTTATACGCACCAATATAGTACATTTACCTACAAATATTTCTACTAAAACAATATAAAAAAGCACCAAAATGGACTTTCAAGAACATTTTTGAGTGATGATGCAATGAATCTTTGTTTTAGAGTTTTGAATCCATTCATTGAAATGGAGTTGAATTTGAACTGATTCACGGAAATGAATCAAAGAAGAATCATGAAACTTGTCCGGTGATACAATCTTTAAATGCACATTAAAATATTGACAATCTCCAGCATTTTTGAGTGATGATGTAAATGCATCTTTGTTTTTGAATTTTGAATCCATTCATTGAAATGGAGCTGAATTTGAACTGATTCACAGAAATGAATCAAAAAAGAATCATGAAACTTATCCGATGATACAATCTTTAAAAAGCGCATTAAAATAATCGCATGATTCACAATCTCCAGGATTTTTGAATGATGATGCAAATGCATAATCAGTTTTGAATCGATTCACTGAAATTTTGAAGTGAAGTGAACAGTTTGAAGTGATTCATGGAAATGAATCAAACTTAAAATCTGTTTTTGATACTGAAGAATTACGAAACTAGTCTGACGACACAATCTTAAGGAAACTTAATGGAAAATAATTACGTTATTCACAATCTTCAGGAAAAATCATTGCAAAAATATAGTAATTATTCATTATATTTATCGCCCAGCCCTAGTGGCCATACGGTGTCAGTGCAAGTGTGTGTTTTTCCACTCTTGTGATGCTGGTCTTTGAAACATGGCATGTCGTGCACAACACCGAGGCTCATGACGCAAAAAAATACGAGTTCAAGAAGATGAGCACTAGAATCACATAAAACAATCCTGCCCTGCGAGTGACATCATTCAACTTCCTGTTTAAACGAAAAGATTTTGTACAATACATTTTGCAAAGGAACCTTTGAAAATACCCCGGCCTTTGCTTTACCTTGAAATAATAAAGAAATAAAAATCATACCACAAATTTGGACTCAAAACTAGATAGAACAAAATATCACTGCTGGGGAGAGAAAATGAAATAAAAAAGACTGCAAACGCTTTGGCAGAAGAGGTGGGAAAGGAATACACAATGAAAGGATGAAAGAAAAGATAAATTACAGGTAAGACATGAAGAAAAGTGGTTTTCTCTTTCGCTCAGCATGGCCCACCATCATACGGCGCTCCTCCCACAGATTCGGGGCTGCAAGTTATTCGTTTTTTCCTCACAGAGGAAAGAAGCAAAGAAAAAAGGTGCTCTTCTCATGAAAGTCACGTTTCACTGATTGTCCACGGAAAATTGCGCCGGCTTCTGCCCGCCGAGGAGAGCAGGAAGTCTCGGCTCAGAGATATACAATCACAGCGTGTGTATATATATATTTATATATAAAGAGATCCTTTACAGGAAAGGAACTGAGAATCCATGTCAGGACCGTGAGGTTGCGGCCCTGCGTTTGAATCCACGTTTCAGGTGAATACTACTCCAGGGACGTCTGTCCGTCGTCTTGCCTGGTGCCGTGCTCCTGCAGGCATCTTTTGCGTATGATTGGCAGCGGGTGAGCCTCCGTGTTAAACACCCAGTCCTCAAGCGGCAGCAGGTCGTCGTCCGAGAACAGCAGGTACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339838 True 2104 lncRNA 0.38 3 1644013 1646512

Neighbor

gene id symbol gene type direction distance location
CI01000086_01313364_01320865 NA coding downstream 321999 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 345954 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 383988 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 390725 1237911 ~ 1253288 (-)
CI01000086_01193934_01219331 NA coding downstream 424573 1193715 ~ 1219440 (-)
CI01000086_01670242_01672517 NA coding upstream 23276 1669788 ~ 1674496 (-)
CI01000086_01852638_01897719 UBR5 coding upstream 205634 1852146 ~ 1897719 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 268501 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 301495 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 348083 1994595 ~ 2008387 (-)
G299445 NA non-coding downstream 88148 1555216 ~ 1555865 (-)
G299437 NA non-coding downstream 99848 1540843 ~ 1544165 (-)
G299435 NA non-coding downstream 105086 1537815 ~ 1538927 (-)
G299414 NA non-coding downstream 148094 1495171 ~ 1495919 (-)
G299394 NA non-coding downstream 180608 1463044 ~ 1463405 (-)
G299518 NA non-coding upstream 3239 1649751 ~ 1650059 (-)
G299519 NA non-coding upstream 3589 1650101 ~ 1650328 (-)
G299522 NA non-coding upstream 6824 1653336 ~ 1653600 (-)
G299527 NA non-coding upstream 20838 1667350 ~ 1667596 (-)
G299529 NA non-coding upstream 21500 1668012 ~ 1694909 (-)
G299107 NA other downstream 517215 1126738 ~ 1126798 (-)
G299173 NA other downstream 876134 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 1047384 587765 ~ 596739 (-)
G298872 NA other downstream 1107703 535023 ~ 536310 (-)
G299528 NA other upstream 21694 1668206 ~ 1695177 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 717819 2364331 ~ 2373059 (-)
G299598 NA other upstream 1219170 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010301 NA non-coding NC_007127.7 CM002900.2 52230494 ~ 52232341 (+)
tiger barb (Puntius tetrazona) G116633 NA non-coding NC_056714.1 CM032083.1 26620290 ~ 26678901 (-)