phf1 (phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894)


Basic Information

Item Value
gene id phf1
gene name phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19197851 ~ 19211186 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260178.1
GGGCGCGTAACAGCAGCGATGCCAGATTTCTGCCGGCACCCAAGGGCATTTCCAAACTTTCTCCAAAAAGTCCACGCGCCGCGGCTCTGCCGGACTAATTACAGCCCAAACTTTCCCTAATGAGCCGCCGCCAGTGTGTGCGGCACCGGCCGAGCGCCTGTGGGGTCGGGCGCAGGTGGGATGTCGGTCAGTCGTACAGATGTGAAGGTGTTCTCCGGATCTCCCTCCCTCTCCATCTCCCTGTGTTTTATGTCTGCGTCACAACAAGTCGAAGGAGAGCGAGGCAGAGATGATGATGGCGTCTCTCTCGGGCTGATTCTCATGCCGCTTCCCAGACAAACGCGCTCGATAGCATCAACCGAGAGACAGCGGGAGGATGGGAACATGAAGcagaagacagacagagacagagagacggacggacggacagacgGTTGCGCACTGACGGCTTGAGTGACGCGCGTTTGATCCGCCGCGACTCTCCAAACGCGCCGATTATTCGGGACAGTGATTGAGACGCAGAACAACACCGGGCATCAGGCGTTTCATGTGAGACTGACATCTCTTCCCCGTCTCTGTGACCCCAACAGAGCAGAACACTTAACACAGGATGGGGGGAGTCAGCGAAGGAGAGGACGTTTTAGCCAGGTGGAGCGACGGACTTCTGTACCTCGGCAATGTCAAACGAGTGGACAGCGTCAAGCAGTGCTGTTTGGTCAGATTTGAGGATAACTCCGAATTCTGGGTCCTCAGGAAAGACATCCACTCATTCTCTTCAGGTGGAGAGGAGGTGTGCTGTATCTGTGATGCTCCGCCCCTTAAAGAACCTCTCGTAAACTGCCTCAAATGTCGCCACGGTTATCATCCAGAGTGCCACACGCCGCCCATCGAACCTGAAGTTGACCCCAACAGCTGGATATGTCGCCAATGTGTCTTCGCAGTCGCAACAAAGaGAGGGGGAGCGTTGAAAAGAGGACGCTTCGCGCGGCTTATGCAGATCATGAAAGTGCGGCTGCCCTATCAGCTGTCATCTTTAGACTGGGACCCGCAGCACTTGACCAACCAGCAGCAGTGTTACTGCTATTGCGCCGGACCTGGAGAgTGGAATCTGAAGATGTTGCAGTGTGGGAGTTGTGGGCAGTGGTTTCATGAAGCTTGCACTCAGTGCCTGACCAAACCTCTTCTCTATGGAGACCGCTTTTATCAGTTCCAGTGCTCAGTGTGCACAAATGGTCCAGAGACCATCCAGAGGCTTCCAATGACCTGGGTAGATTTGGCCCATTTGGTGCTGTATCACCTCTCCCTGTGCTGCAAGAGGAAGTATTTTGATTTCGATCATGAAATCATGTCTTTTGCAAATGAAAATTGGGAATCTTTGCTTCTTGGCACGCTGTCAGACACACCGAGGCAAGACCGTTGCCAAAACCTGCTCAATGCTTTAAATTCCCACAAAGACAGGTTTGTCTCGGGGAAGgaaataaagaagaagaaatgtctCTTCGGTCTTCAAGTTCGGGCTCCTCCCCCTCTGTCATCGGACCAATCACCTTTCATCGCCGAACAGCCAATCAACATCACCCACAGGAGAAGTCCCACGTCACTGCCCTGCCAGCGGAGAGCGGTGGGTCCGGAGGCCCGTAAATCAAAGCGCCGGGTCACTGAGACACAGAGTTGTCCAACGGGAGTCGCGACAAACGCCATTGACCTGGTGCCATGCTGCCACGGTTATGTGGATGGAACAAGCCTGTATAACCCTAGAAAACCAGAGGAAGAGAtgagtttgggTTCACCTCCCAAGAGAATGTACGCGCTCTATCACCCTTCATACAACGGATCTCAGGACCTGTCTAGAACTCTGCATCATTACAGTGCAGAGGACCCTTGTCGACTTCCAGCCCCCTGCCTTCCATTCTCTCTGTCCTCGGCTCACCCGACCGGACAGCGCTATGAAAGCTGCCCGTCTCTCTTCCTGCATGACGTGCCACCTTACCCCAGTACAGTCGGGATGGGGGGTCCCACGCCGATGGGGTGGGGCGGGAACGACTCGGTCAGGATCCTGGCCAGACGCGTAACGGCGGACGGGAAAGTCCAGTACCTCGTGGAATGGGGAAACGTGAGCGTGTACTGAGAACCTGCGCGcggcagaggaagaggaaagggCTAGAGACATCAAGATGCATCGTTAGGGTTTGCATGGTTACGAGCAGAGGTGTGAAAGCATCAATGAGCAGGTGGGTGTTCAGGGGTCGGGAGAAGAAAACCACGTCGAGCAAATCCAGGTTGAGCTACGCAGCAGCTTCACTCTGAGATTATACTGTTAAATCTCTTACACTTTCTTTTACAGTGTCTCCTATATTTTGAATACTGTTAGAAAACGCCTTTAGAATGCCTTGAACTTTATTATCATGATTTGTAATGCATAAGCTATTCATCGCCATCACATGTTCTTTATGTACAGTTTAAATTTCAGGAAAGCTTCATCGTGCGGTCACatcaataattgtaatatttcgaCGACAGGGAAACGAGAGCTCCTCTAAAAATAGTCCTTAGTCCAGGTTTAGTCCAAGTTAAATGCGGTCCACATATGTGgcatattgttaaataataatttccacTTACAAAAATGTGGGTTACACTTAAAATCTGTTACAATGCTACAAATGAACCCTGTTAATTCTATCGTAAGTGCTTCTAAAATCTTGACATTCGCagctttttatgatttatttatttatttatttttatttaagaaaatgtggGATTGACGTTACGCTGCAAATGCTGTCGAATTTGTGCTAAACCCTGAATATTCATATCAAATATCCTTCAAACTTTTTATGATGGGAGCCAGTCGAAACGTTCAAAATGCAGTTAATACCCGGTTactaatataaatgttaaatatttagagGTATTTTCAAGTAATTGCAAATTATAATAGTTGGTCAGCATATTTTATCCAAAGGAGGATTTTAAACGAATAAGCgtacatttagtttaaaattaaaaggctgttttaaaatctttaaaccCATGTTAAAATTGTGGAAACCTATTTCTGACACGTAAGACAAAAAATGTGCTTTGGTAAATCTAAAATACgaaattaaaagataaataaactataaaatgttGTACTTATTAGATGAGATGTAACAACTATGACAAGTCAAAATGATAACATGCTGTATTAATAAGacatacataaattacataGTACAAATTACATGCATAGTGCAAATTATTATGAGCTATGTATTAAGACCTATTTATAAttgacaaaaagtaaaaattatgaaacggtcataattatgacaaacGTTTTAGTTATACcgtaaaatgattattaattatgacCTATCATGTCATAACTGACATGatgtaaataattgttaaaaaaatagtgaCAGATATCATAGTTGtgatataaaaagtaaaaaatgatgtctaaataatttgtaataattgtgacttttatgTCAGAATTGTGGCTTTCTACGTAAAGTATgctaacatttttatgttatacaattaataattttatttctttatgagACTTTGCATTTAACGATTATGATTTGCAATGTTCTTTTATATGTCACAATCATGACTTTTCATGCCATAACTGTGATTTAccaaagcatgatttttttcttactaCATGTGGACTTCCATAGTAACTCAAATAGCTAATTgcgtattgtttttaaaaagtgcagcGACAGAAATACGATTCAAGATGGcagaaactaaaaacatttatcaggtcCAATAAAGGTCATTCTTTGCAGATGCAGATCATTCTACCTGAATAAAAGCGTGAGGCTGTTAGTCCTTATGTGGAGCTCATTTCATCAGTGAATGATAATGAATGTAtcgtgtgtttttttgtttcatagtttttttttttttttcatggtatGTACTTGTTAGGTCGTAGATGGACTGATTTCATGTCAGGGTGACAAGAATTAGCAGACTGTAGTCTTTTTTTATAGTCAAGTCTAAGTTTAATTTGATGTATTCTTTGACGTTTTGTCAgattatgtttatatgtactCTAGGTTGACacctaaaatgtaaacaaacaataaaaaaagcattatgttGTA
>XM_043260179.1
ATAGGGCGCGTAACAGCAGCGATGCCAGATTTCTGCCGGCACCCAAGGGCATTTCCAAACTTTCTCCAAAAAGTCCACGCGCCGCGGCTCTGCCGGACTAATTACAGCCCAAACTTTCCCTAATGAGCCGCCGCCAGTGTGTGCGGCACCGGCCGAGCGCCTGTGGGGTCGGGCGCAGGTGGGATGTCGGTCAGTCGTACAGATGTGAAGGTGTTCTCCGGATCTCCCTCCCTCTCCATCTCCCTGTGTTTTATGTCTGCGTCACAACAAGTCGAAGGAGAGCGAGGCAGAGATGATGATGGCGTCTCTCTCGGGCTGATTCTCATGCCGCTTCCCAGACAAACGCGCTCGATAGCATCAACCGAGAGACAGCGGGAGGATGGGAACATGAAGcagaagacagacagagacagagagacggacggacggacagacgGTTGCGCACTGACGGCTTGAGTGACGCGCGTTTGATCCGCCGCGACTCTCCAAACGCGCCGATTATTCGGGACAGTGATTGAGACGCAGAACAACACCGGGCATCAGGCGTTTCATGTGAGACTGACATCTCTTCCCCGTCTCTGTGACCCCAACAGAGCAGAACACTTAACACAGGATGGGGGGAGTCAGCGAAGGAGAGGACGTTTTAGCCAGGTGGAGCGACGGACTTCTGTACCTCGGCAATGTCAAACGAGTGGACAGCGTCAAGCAGTGCTGTTTGGTCAGATTTGAGGATAACTCCGAATTCTGGGTCCTCAGGAAAGACATCCACTCATTCTCTTCAGGTGGAGAGGAGGTGTGCTGTATCTGTGATGCTCCGCCCCTTAAAGAACCTCTCGTAAACTGCCTCAAATGTCGCCACGGTTATCATCCAGAGTGCCACACGCCGCCCATCGAACCTGAAGTTGACCCCAACAGCTGGATATGTCGCCAATGTGTCTTCGCAGTCGCAACAAAGaGAGGGGGAGCGTTGAAAAGAGGACGCTTCGCGCGGCTTATGCAGATCATGAAAGTGCGGCTGCCCTATCAGCTGTCATCTTTAGACTGGGACCCGCAGCACTTGACCAACCAGCAGCAGTGTTACTGCTATTGCGCCGGACCTGGAGAgTGGAATCTGAAGATGTTGCAGTGTGGGAGTTGTGGGCAGTGGTTTCATGAAGCTTGCACTCAGTGCCTGACCAAACCTCTTCTCTATGGAGACCGCTTTTATCAGTTCCAGTGCTCAGTGTGCACAAATGGTCCAGAGACCATCCAGAGGCTTCCAATGACCTGGGTAGATTTGGCCCATTTGGTGCTGTATCACCTCTCCCTGTGCTGCAAGAGGAAGTATTTTGATTTCGATCATGAAATCATGTCTTTTGCAAATGAAAATTGGGAATCTTTGCTTCTTGGCACGCTGTCAGACACACCGAGGCAAGACCGTTGCCAAAACCTGCTCAATGCTTTAAATTCCCACAAAGACAGGTTTGTCTCGGGGAAGgaaataaagaagaagaaatgtctCTTCGGTCTTCAAGTTCGGGCTCCTCCCCCTCTGTCATCGGACCAATCACCTTTCATCGCCGAACAGCCAATCAACATCACCCACAGGAGAAGTCCCACGTCACTGCCCTGCCAGCGGAGAGCGGTGGGTCCGGAGGCCCGTAAATCAAAGCGCCGGGTCACTGAGACACAGAGTTGTCCAACGGGAGTCGCGACAAACGCCATTGACCTGGTGCCATGCTGCCACGGTTATGTGGATGGAACAAGCCTGTATAACCCTAGAAAACCAGAGGAAGAGAtgagtttgggTTCACCTCCCAAGAGAATGTACGCGCTCTATCACCCTTCATACAACGGATCTCAGGACCTGTCTAGAACTCTGCATCATTACAGAGGACCCTTGTCGACTTCCAGCCCCCTGCCTTCCATTCTCTCTGTCCTCGGCTCACCCGACCGGACAGCGCTATGAAAGCTGCCCGTCTCTCTTCCTGCATGACGTGCCACCTTACCCCAGTACAGTCGGGATGGGGGGTCCCACGCCGATGGGGTGGGGCGGGAACGACTCGGTCAGGATCCTGGCCAGACGCGTAACGGCGGACGGGAAAGTCCAGT

Function

symbol description
phf1 Predicted to enable metal ion binding activity and methylated histone binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of histone methylation. Orthologous to human PHF1 (PHD finger protein 1).

NR:

description
PREDICTED: PHD finger protein 1-like isoform X1

GO: NA

KEGG:

id description
K11467 PHF1, PCL1; PHD finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260178.1 True 4115 mRNA 0.43 15 19197851 19211183
XM_043260179.1 False 2091 mRNA 0.55 15 19199873 19211186

Neighbor

gene id symbol gene type direction distance location
syngap1b syngap1b,syngap1,LOC107592452,LOC107726670,LOC107688248,LOC108433893,LOC106605281,LOC106581894,LOC101464846,LOC102301914,LOC102194363 coding downstream 2422 19095755 ~ 19195429 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding downstream 103113 19078953 ~ 19094738 (-)
paqr6 paqr6,LOC107728479,LOC107688246,LOC107726661,LOC107671432,LOC107592147 coding downstream 123041 19056157 ~ 19074810 (-)
rbm8a rbm8a,LOC107671476,LOC107592456,LOC107592145 coding downstream 217225 18977536 ~ 18980626 (-)
otud7b otud7b,LOC107726676 coding downstream 221158 18954329 ~ 18976693 (-)
dnase2 dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517 coding upstream 32756 19243942 ~ 19249649 (-)
LOC122359968 LOC107728465,LOC107666778,LOC107726656,LOC107592540,LOC107592151,LOC107665645,LOC107665648 coding upstream 48138 19259324 ~ 19261794 (-)
upk1a upk1a,LOC107728482,LOC107666813,LOC107592444,LOC107686548,LOC107709649 coding upstream 264632 19475818 ~ 19479474 (-)
zgc:101716 zgc:101716,LOC107686482,LOC107556972,LOC107728463,LOC107709702,LOC107666748,LOC107592507 coding upstream 276571 19487757 ~ 19490733 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding upstream 654540 19865726 ~ 19886663 (-)
G114399 NA non-coding downstream 134680 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding downstream 156085 19012655 ~ 19041766 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding downstream 209925 18985403 ~ 18987926 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 457022 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 509456 18687166 ~ 18688395 (-)
G114458 NA non-coding upstream 69242 19280428 ~ 19283527 (-)
G114462 NA non-coding upstream 81807 19292993 ~ 19294087 (-)
G114433 LOC107666765,LOC107728460 non-coding upstream 94320 19305506 ~ 19307497 (-)
G114468 NA non-coding upstream 96732 19307918 ~ 19308512 (-)
G114438 LOC107728464,LOC107666853,LOC107728451 non-coding upstream 124691 19335877 ~ 19343773 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 376741 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 499444 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 526577 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 547242 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 677564 18492626 ~ 18520287 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 205776 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 385246 19596432 ~ 19657724 (-)
G114715 NA other upstream 955609 20166795 ~ 20177758 (-)
G114793 NA other upstream 1230779 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1424939 20636125 ~ 20650937 (-)

Expression


Co-expression Network