rspo2 (rspo2,LOC107679648,LOC107705839,LOC107600624,LOC107755916,LOC107551185)


Basic Information

Item Value
gene id rspo2
gene name rspo2,LOC107679648,LOC107705839,LOC107600624,LOC107755916,LOC107551185
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22261301 ~ 22313025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260352.1
CAGCCCTCTCTCCGATCGAGGGGCTTCTGAAAGTGCTCCGAAAAGCCCCACAAGATCTTGGAGTCTCCACGTGACAGCAGCGCCTATATAGCATCAGCACCAGTAGAGTGATACTCCATCACCAACCGAGCGCCGCAGCATATGCCACAGTTACACACACATCCTCACGCACCTCAAGGGTTTATTCTAGAGCTTTTGCAGACTATTGCATCCATGTGTTTTCTCGCTCTGTCTAGGGGACGAAGGGACTAAACTTTTCCTGCGAGAGGGATGCTGGATGTTCCAAGTCCGCTTTGGCAGTCGGAAGGAACTTGATGTATAGGCaaagtttctctttttttggacTGGACCCGCGCAGGTATATTTCTTTCGCTCCTCTCGTCTACTTTTGAGGGCACCCGCCGCGTCTCGTGCGCTTTTGGAGATTCGCTGATTCAAGATCTTTTGAATGAAACCGTTCGTCCGCAAACCACGTTGATCCACCAAGGTGCATTTGTTACTCAACCGACCTCAagttaaaagctttttctctctccacagACAATAACGAGACACTTTTTAGGGTATAAAAAGTGCGTTTCGctctctaaaatgacattaaccGGTGGTGAAAGATGGTGTTTTCTCTACCCCTCTAATGTGTGACACAGCTGAGTCCGGACTCCTCAACTCTCCGCTTCTCTGtggaaaaatatacatattgaAACCTCATATACGGACCTTGCAGGCTCGCGGCGAGTACCTTTGACGCTTTCTACCGTGAGTAGGGACAATCACACAGCCGCCCAGATGCAGTTTCGTCTGTTCTCATTTGCGCTGATCGTGTTGAACTGTGTGGACTACAGCCACTGTCAGACGCAGCAGTCTCACCGCTGGAGAAGAAACAAAAGAGCTAGCTATGGAGCTTATCCCATCTGTAAAGGCTGCTCGGTGTGTTCCAAGGACAACGGGTGTATGAACTGCCAACCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTATGGCGAGTGTCTCCATGCCTGTCCTTCAGGCTACTATGGCATGCGCGGGACAGAGATCAACATGTGCGCCAGGTGTAGGATAGATAACTGTGAGGCCTGCTTCAGCAAAGACTTCTGCACAAAGTGCAAGCCTGGTTTTTACTTGCACAAGGGCCGGTGCTACGAAAAGTGTCCAGAGGGCTTTGCTCCCCTGGAGGACAGCATGGAGTGTGGAGAGGGCTGTGAGGTGGGCCAGTGGAGTGAGTGGGGGACCTGTACCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCCGAACACGGCATATTGTGAAGAAGCCACCAAAGGACACGATACCATGTCCAACCATCGCCGAGTCCAGGAGATGCAAAATGGCAATGCGACATTGCAGAAAAGGGGGTTCGGGGAAAGGCCACCGAACCAAAGACCAGAAGAAGAAGTCCAACAAGCAGAGGCTGCGCTTCCGGGCTCAGAACCAACACAGCGACCACCTCGCCTCTCTTCGAGCCAgccagtaaaaataaataaataaataaataaaaaatagaaagagcgagagagagacatttCGATGGAACAAAGACCACAAAGCTGCTAACCCATGCTCCACACACACCTACCCTGATGAAAACACAAGTCGCGCATCCAAACGGGATTATTCACACTCATGTGGTCACACTGTGTCTCTGTGCCTCCTGCTGCTTCCCTCACCGGTGACACGTCCCCCCCGACCCGTGACCCCACTGTGATATCATGGAACACTATAGCAGCTGTTCATATAGCTCATaactgaggaggaagaagagagagactGAGCTGGAAGCACAGAAAGCTTGGGCCTGGAGACCTGGAGGAGTCGAACGAGCACAGAGTGGCGAAAGGAGCAGAAGGGATTAGAAACGTGATTGACTGATAATGATGCCCtgaaaaacaagagagagaCTTATCTGTATTTATGTACAATTTACACCATCCCCTTCCCTTATGAAATCAAGGCAGCGTGTGTCATGTATTGCCTTTCTTGTCCAATAGGTACTTTGTTTTTCACAGCAATGTTGCAAACCATGCATAGTTGCGAAATTATTATTCTCAGCACAAGATGTTTACGTCCAGACCGCTTTATGCTTTGACTGTATATTGTGGGTAAGAATCTTAGTTGTTCAACTAGCATGGCCACAAACTCATGTGTACATAGTTGGTGAGTTTATCTAATAACGGTAACATTGacgataaatatatatataaaaaattactgtattttcagtATTGACACCTTCAGAGTTTAAATGTGTAAAGGGTTATAATACCAGCTACagttaaatgaatttaaaaagaacaaaaagctaaataaaaagcatagcCTCCACATAGCTATTACATTTATATGgtatataattgatttatttattgatctttttttattattattattattatttttatgtttggtgAAAATGATGTCTCTGTACCTGATACTCCTCAGTGCTGAAGTATTTTTTCAACCACTTATGACAATACAAAATATCTCCAACAGTAGACAGCGATTGCGTCCGTTTTGCCGATAAATGTCCTTCAGAAAATCATTGTGTAAACCTGGTTTAGCATCTTGTACTTTATGTTGATCACACATCCCGCAGCAGCTGAAGTATATCGTCAACTGATTGataatgtgtatattgtgtGCTAATAAAACGCAGTTCATGTTGCA

Function

symbol description
rspo2 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

NR:

description
PREDICTED: R-spondin-2

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260352.1 True 2726 mRNA 0.46 5 22261301 22313025

Neighbor

gene id symbol gene type direction distance location
eif3ea eif3ea,LOC107755923,LOC107551184,LOC107679649,LOC107705216,LOC107666832,LOC108434212 coding upstream 2535 22220874 ~ 22258766 (+)
LOC122360094 tmem74,LOC107705834,LOC107666858,LOC107713801,LOC107679640,LOC107551181,LOC107579295 coding upstream 121474 22136568 ~ 22139827 (+)
gdf6a gdf6a,LOC107705204,LOC107600621,LOC107666829,LOC107551190,LOC107679643,LOC107713806 coding upstream 251142 22004235 ~ 22010159 (+)
ebag9 ebag9,LOC107666870,LOC107705161,LOC107600620,LOC107679646,LOC107713822,LOC107551191 coding upstream 271385 21983890 ~ 21989916 (+)
tmem42a si:dkey-99n20.7,LOC107705805,LOC107666806,LOC107600663 coding upstream 288801 21971222 ~ 21972500 (+)
adgrb1a adgrb1,adgrb1a,LOC107697227,LOC107756055 coding downstream 240738 22553763 ~ 22639975 (+)
si:ch211-198c19.1 si:ch211-198c19.1 coding downstream 422854 22735879 ~ 22737796 (+)
cep162 cep162,LOC107681424 coding downstream 431859 22744884 ~ 22761065 (+)
pogzb pogzb coding downstream 504038 22817063 ~ 22830341 (+)
selenbp1 selenbp1,LOC107588475,LOC107556087 coding downstream 520703 22833728 ~ 22838634 (+)
G115200 NA non-coding upstream 259684 21997010 ~ 22001617 (+)
G115157 NA non-coding upstream 431770 21828216 ~ 21829531 (+)
G115134 NA non-coding upstream 566757 21693494 ~ 21694544 (+)
G115074 NA non-coding upstream 870139 21390781 ~ 21391162 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding upstream 1091948 21167994 ~ 21169353 (+)
G115288 NA non-coding downstream 214132 22527157 ~ 22530262 (+)
G115342 NA non-coding downstream 454476 22767501 ~ 22768460 (+)
G115401 NA non-coding downstream 670036 22983061 ~ 22983700 (+)
LOC122359996 NA non-coding downstream 686424 22999449 ~ 23003110 (+)
G115384 NA non-coding downstream 695579 23008604 ~ 23009835 (+)
G115193 NA other upstream 281933 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 339770 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 388329 21849989 ~ 21872972 (+)
siglec15l NA other upstream 1490909 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 1956617 20267541 ~ 20304684 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 596510 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 651544 22964569 ~ 22975774 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 797258 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 851541 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 909025 23222050 ~ 23223928 (+)

Expression


Co-expression Network