atp2c1 (atp2c1,LOC107666823,LOC107592020,LOC107600500,LOC107668304)


Basic Information

Item Value
gene id atp2c1
gene name atp2c1,LOC107666823,LOC107592020,LOC107600500,LOC107668304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20707026 ~ 20737160 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260705.1
GTTTGGTTGACAGTTCTGAATGTTTCCGTCGCCCCGCCCCCTTTTGCGTGCCTTGCGTGATGACGCCATCAGCGGCCGTCAGACAGAACTGACGAAAGCTCACGGAAGATGCAAAAGAAAAAGGACCCGCTGcttGCCGAGTGTCAACCCCACTGTGAAAATGAGACCATGGTTCCAGTACTGACTTGGAAAAAAGCCAGTGAACTACCCGTGAATGAGGTTGCCTGTGCGCTGCAGGCTGACCTGCAGTTCGGTCTCACCCAGGAGGAGGTTACGCGACGTCGCGCCTACCACGGATGGAACGAGTTTGACATTAGTGAAGATGAACCACTctggaaaaaatatatctatcAGTTTAAAGACCCGCTCATCCTGTTGCTGCTGGCATCCGCTGTCATCAGTGTGTTGATGCGTCAGTTTGATGATGCCGTCAGTATCACCGTGGCCATTATTATAGTTGTTACAGTTGCCTTTGTACAGGAATATCGCTCAGAAAAATCCCTGGAGGAGCTGGGGAAACTTGTGCCACCAGAATGCCATTGTGTTCGAGAAGGACATCTGGAGCACCTTCTGGCTCGAGAGCTCGTGCCTGGGGACACCGTCTGTCTGTCAGTCGGAGAGAGAGTCCCAGCTGACCTGCGCCTGTTCGAGGCGATGGATCTGTCAGTTGACGAGTCCAGTTTGACAGGAGAGACCACCCCCTGCACCAAGACCTCTGCCCCTCAGCCGGCCGCCACCAATGGCGATATCACGTCCCGCAGTAATATTGCCTTCATGGGTACGCTTGTGCGCTGTGGGAAGGCCAAGGGCATTGTCATAGGCACTGGAGAAAATTCAGAATTTGGTGAAGTTTTTAAGATGATGCAAGCAGAGGAGGCTCCTAAAACCCCATTACAGAAAAGCATGGATTTGCTGGGAAAACAGCTCTCCCTTTATTCCTTCGGGATAATCGGAGTGATCATGATGGTTGGATGGCTTCAGGGGAAGTACATTATGGACATGTTCACCATAGGTGTTAGTCTTGCTGTGGCAGCTATCCCAGAAGGCCTCCCCATTGTAGTCACAGTGACTTTGGCACTGGGAGTGATGAGGATGGTGAAGAAACGGGCGATTGTTAAGAAACTGCCTATAGTGGAGACGCTGaGCTGCTGTAATGTGATCTGCTCCGATAAGACAGGCACTCttactaaaaatgaaatgacagtCACTCACCTGTTCACCTCTGATGGACAGCATGCTGAGGTCACTGGCGTTGGGTACAACAATTCCGGTGAGGTTTTGATGGATGGAGAGGTGGTGCACGGCTTCTCCAACACCTCCTTCAGCAAGATTGTGGAGGCTGGCTGTGTGTGCAATGATGCAGTAATCAGGAGCAACACTCTGATGGGCCGTCCTACCGAAGGCGCCCTCATCGCTCTGGCTATGAAGATGGGTTTGGAAGGGCTGCAGAAGGAGTTTGTGCGTTTGGAAGAAATTCCCTTCTCCTCAGAGCAGAAGTGGATGGCTGTCCGTGTCGTCCATCGCACCCAGCAGGATAAGCCTGCCACATTCTTTGTGAAGGGTGCCTATGAGCAGGTCATCCGCTTCTGTACTTCTTACAACAGTAAAGGCGTCACTCTGCCTCTGACCCATCAGCAGAGAGAGCTCTACCAGCAGCAGAAGAGCTACATGGGCACTGCAGGTCTCAGAGTGCTGGCGTTTGCTTCTGGATCTGAGATGGGTGCTCTTACCTTCCTGGGGCTGGTGGGCATCATCGACCCTCCCAGAGCGGGAGTGAAAGAGGCAGTGGCAACGCTGATCAGCTCTGGAGTGGCGGTGAAGATGATTACAGGGGATTCACAAGAGACTGCAGTGTCAATTGCAAATCGACTGGGCCTCTATACCAAGGGTTCTCAGTCTCTGTCTGGAGATGAAGTGGACCAGATGGACATCCAGCATCTCTCTCAGATAGTGCCTAGGATAGTGGTATTTTACAGAGCCAGCCCTAGACACAAGTTAAAGATAGTTAAGTCCCTGCAGAACATAGGGGCTGTTGTGGCAATGACGGGCGACGGTGTTAATGACGCAGTGGCTCTGAAGGCAGCAGACATTGGTGTGGCAATGGGTCAGACTGGCACTGATGTCTGCAAAGAGGCAGCAGACATGATCCTGGTAGACGACGACTTTCAAACTATCATGTCTGCTATTGAAGAAGGGAAGGGCATAtacaacaatattaaaaactttgTGCGCTTTCAGCTGAGCACGAGCATTGCCGCCCTCACCCTCATCTCCCTGGCAACGCTTATGAACTTCCCCAACCCTCTGAATGCCATGCAAATCCTCTGGATCAACATCATTATGGATGGGCCGCCAGCCCAGAGTTTGGGAGTGGAGCCTGTGGATCGAGACGTGATCAGGAAGCCTCCAAGGAATGTTCGAGACAGCATCATCACGCGCAGTCTGATAGTAAAAATCCTAGTCTCGTCCTTCATCATTGTTTGCGGCACACTGTTTGTGTTCTGGAGAGAGctgcgGGACAATGAGATCACCCCACGGGACACCACCATGACATTTACCTGTTTTGTGTTCTTTGACATGTTCAACGCTCTCAGTTCTCGATCACAGACACGGATGGTGCACGAGATGGGCTTATGCAGTAACAGGATGTTCTGCTATGCTGTTCTGGGCTCCATCATGGGCCAACTCCTAGTCATCTACTTCCCTCCGCTACAGAAGGTCTTTCAAACCGAGAGCCTCAGCATTTTAGATCTGCTGTTCCTGGTGGGCCTCACGTCCTCTGTGTGCGTGGTGTCGGAGGTCATAAAGAAATTAGAGAGACTCAGGGGTGGAGAAAAGATGGCCGACACTGATGATTTCCATGATGTATGACGCACATTGTGTCCCGTGCAAGAGATGGTGGGAGGGGCACGTGGTTTGGAATGTTGCTCGGGCCGGTCTCATGCTTTACAAAACTATCTGAAGTGATCAGTCGGGTCCGACCTGTATGTACAGTACCTTTTAAGGTCAAGACCAGGAGCTGATTGTGGAACGATGACCTGGTCCTGACTGAAATGTCGTCTCTGACACGTGCCCTTTCCCGTGGAGATGCTTTGGTGTGCTGCTTTATTGACTGTACTACTTCCCATAGCATCTGGGGCGAACTTTATTTATGAGATACTGTATCTGTCTATACAGTGGCTGTACTGAATTCATGATTTAAGGGGAtgtattatgaattttttttttttattatgattattaaaaggattttgtcttttaaattttaagcaCTTCTGGTTAGAGGTTTGTGGAACAACGTGGATAATGCCTTTCTGCATTCCAGATTTCAAATTATGCTTGAATTATCGGTTATTTAGGATTAAACCATGAGTGGAAGGTCCAGTATTTTTCGTAACGGACCACTTAAAATCTCATGATACTCAATGATTCTCAGAGTGTGCGTTAAGACATACGTGATGTGCTAAGTCATCATGGATgccatattcattttataacacAGTGAAACAGGCACTGTTTAGATTCTGCAAAGGCTTAGTCTGCTTTTTATAATGACTTTATATTTGAACATACAGGAGCCCAAAATATGATGCCGTTACGAGACTACAGGGTCCTACTTTATGATGGTACATGCACTATTAGTTCTTATTTTAGACTGATGATTAATACAACTGGCTTGTACAATTACTTATCAGTTCCTCTGTATTTACGTAGTATCAATACTATATTGTTACTTTCCATATGTTAATACACTGGTATTAGGGCCATCTGAAATAAGATGCTTTTGcctttttcactttattttggcATTTCCTATAGTATTCTTTATTTTCTCACCTGCTTGGTGCTTGGTTAGGTTTAAAGATGTAGTAGTTGTTGAAATGGAGGCTCATGTTGGGTGTACAGAAACGTTCGACTGACCAGTCCTTACCCTAACAACCGCCCCTCCCACCCCTCATGCCGAAAAAACCTCAGTGCAGCCCACCGGCATTGTCTTATTCCCATCTGCCAACACTGTATCTTGTTAATGAGGTACAGCTAATGATGATACACTATATATCAGTTCTTGCAGTATACGATAATGTTTGTCCTTTGTATTGCGGATAGTGGTTCTTTGATCACGTAGTCCATATTTATTAATCGGTGAGATTCCTTTTCTGCCCTTTCTGTTTTCTGGCATTGCTGTTGcttttgaaaacaaacattgtaATACACTGATATTAAACagtataaaaatgttcaaatgaagGGTGATAggtaaaaagcttatttttttatttttgatgttttttttttgttttttgttttttcttctatttttaagattgtatttattttattgtggttTGCACAGCTGAAACCAGTAATCTGTTGTGGTCATTTCAGAACACAATTGTACaataaaatttttacaaatttaaaaaaaaacgtgcttttgattttgattgttgattaaatctgattatttaactattttggAAAACAACgtaatgcatgcattttcaaGTTAAAATTTATTGAATTCAATCATGGAAatccaaatacattttttataatacctTAATTGTTCACAGTTTGACAGTATGAAAGATCTAaccatttagattttaatataattcatgtaatgcaaacatttacaattaatcTAAACACTCATAAATGCATTATGCAGTAATATAGAAATCTGTTATTTACACAAtatcaaga

Function

symbol description
atp2c1 Predicted to enable ABC-type manganese transporter activity and P-type calcium transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum; and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1).

NR:

description
PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform X2

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260705.1 True 4707 mRNA 0.45 27 20707026 20737160

Neighbor

gene id symbol gene type direction distance location
cep85 LOC107717359,LOC107600497,LOC107666796 coding upstream 7177 20687866 ~ 20699849 (+)
si:dkey-199f5.8 si:dkey-199f5.8,LOC107717362,LOC107666799,LOC107713844,LOC107592109,LOC107668306,LOC106605235 coding upstream 26825 20661662 ~ 20680201 (+)
psmc4 psmc4,LOC107719110 coding upstream 47237 20654160 ~ 20659789 (+)
gramd1a gramd1a,LOC107719112,LOC107666837,LOC107685915,LOC107737824 coding upstream 71637 20609913 ~ 20635389 (+)
LOC122360334 NA coding upstream 102762 20602574 ~ 20604264 (+)
LOC122360262 NA coding downstream 4658 20741818 ~ 20746979 (+)
LOC122360859 LOC107668277,LOC107592573,LOC107713820 coding downstream 10171 20747331 ~ 20751315 (+)
LOC122360694 NA coding downstream 14613 20751773 ~ 20755366 (+)
rpp25l rpp25l,LOC107666877,LOC107600503,LOC107717368,LOC107713839,LOC107592013,LOC107668321 coding downstream 19835 20756995 ~ 20759232 (+)
LOC122361050 LOC107717367,LOC107666876 coding downstream 22208 20759368 ~ 20764347 (+)
G114826 NA non-coding upstream 68386 20637446 ~ 20638640 (+)
G114813 NA non-coding upstream 120199 20586060 ~ 20586827 (+)
LOC122360972 NA non-coding upstream 284837 20414210 ~ 20422189 (+)
G114707 NA non-coding upstream 293137 20413557 ~ 20413889 (+)
LOC122359979 NA non-coding upstream 464482 20234998 ~ 20242544 (+)
LOC122360417 NA non-coding downstream 191542 20928702 ~ 20929441 (+)
G114978 NA non-coding downstream 380989 21118149 ~ 21120532 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding downstream 391968 21129128 ~ 21132105 (+)
trnae-cuc_37 NA non-coding downstream 401721 21138881 ~ 21138952 (+)
G114983 NA non-coding downstream 403882 21141042 ~ 21142030 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 402342 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 479949 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1059220 19643829 ~ 19647806 (+)
G114382 NA other upstream 1378263 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 1414145 19283761 ~ 19292881 (+)
siglec15l NA other downstream 30118 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1112829 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1146749 21883909 ~ 21921531 (+)
G115193 NA other downstream 1239957 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 2172375 22909535 ~ 22915477 (+)

Expression


Co-expression Network