LOC122360334


Basic Information

Item Value
gene id LOC122360334
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20602574 ~ 20604264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260849.1
CCTGTGCTTCCTGCATTTCTGCTAAATATCACGACTTTCTCTGAGGTGGCCTACAATTATTAGTTGCGTCAGGATGTGGGAAAATGTTATAGTTGATGGCGGCCTTCAAATAACAACTACTGTAGCTTCTATACTGAGAATTTCTATACTAGTGTAGTCACATAAATAAATGGAGGACATGAGCATGTGAATTGTGCGTTTACCCATTGGATTAGAAAACTAGATGAAACATAGGACACCAAAATAGCCTACACTTTCTTGTTCCCTACTTCCAAGGAAGTTGAGTGTAAAGACACACCTAGCGCACGCATATAGGAACTGTTTGACTCGGTTAGCTTGTAGAAGAGGCACGGCACTTAAGGGGCTATGGCGAAATCTGTTAAGGATCACCtgcaagatatttttgatgatctTGGAGCGGGAGGTCagaaaaagtttaaaagcaaaTTGCTCGACTGGAAGTCAGAACCTCGCGTGCGACGAGCTGCTATCGAAAAGATCGAGGATTCCATAGATCTCGCAGAACTGATGGTGAACACTTTCACTACGTCTGGCGCTGTTGCCGTAACAATCGACATTTTACGGGCTATTGGCTGCAACGAACAAGCAAATGATCTCACTGAAAGCACGGGACAAAAAGCTTCAAATGTTCCTTCAGCGGAAACAGGCGCTCCATCTGctgAGGACTTTATCGATAAGAATCGCACGGAGCTGATAAATCGAGTGAGTAACGTAGACGGCGTCCTGGATGAACTTCTTCAGATGAGAATCATCACAGAGGAGGCCTACAGCGACATCCGTTCGGAGAAAACCTCACAAAGCAAGATGAGGTTATTATTAAGTGGTCCGATTAAATCCGCTGGCAGGAAAGGGAAAGAAGCTTTATACAAAGCTCTCAAGAAAGTTGAGCCCTGCTTGACAGAAGATCTGGAGTGACAGTGAAAAGCCtggatatttttacatttaatgtttctaTTTGCTTGTCTAATTAGTGTACAGGATACATAACAAAATCAATGAACTGTTTTCAGCACACGAATGTTTAaacgttttaaatgttttaatgcctGAAATTCGAATGTTGTTTcccctacatttttttttgcaaacaagaAAGGGTGCATCCAAAATCTTGCTTGCTAACCTAAGATGACAAATTCTTGTCTTTGCCAACTTATCTTTTAATCACCgttcaataaacaagcaaacCATTTCAA

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0032090 Pyrin domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260849.1 True 1217 mRNA 0.41 3 20602574 20604264

Neighbor

gene id symbol gene type direction distance location
caspa NA coding upstream 219 20598137 ~ 20602355 (+)
LOC122360332 LOC107719157,LOC107666788,LOC107737823,LOC107685946,LOC107592920 coding upstream 4568 20595014 ~ 20598006 (+)
zp3d.2 LOC107600495,LOC107666789,LOC107705096 coding upstream 22364 20576410 ~ 20580210 (+)
zp3d.1 LOC107735595 coding upstream 26799 20571593 ~ 20575775 (+)
dyrk1b dyrk1b,LOC107600491,LOC107666783,LOC107685988,LOC107719113 coding upstream 31956 20528058 ~ 20570618 (+)
gramd1a gramd1a,LOC107719112,LOC107666837,LOC107685915,LOC107737824 coding downstream 5649 20609913 ~ 20635389 (+)
psmc4 psmc4,LOC107719110 coding downstream 49896 20654160 ~ 20659789 (+)
si:dkey-199f5.8 si:dkey-199f5.8,LOC107717362,LOC107666799,LOC107713844,LOC107592109,LOC107668306,LOC106605235 coding downstream 57398 20661662 ~ 20680201 (+)
cep85 LOC107717359,LOC107600497,LOC107666796 coding downstream 83602 20687866 ~ 20699849 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107600500,LOC107668304 coding downstream 102762 20707026 ~ 20737160 (+)
G114813 NA non-coding upstream 15747 20586060 ~ 20586827 (+)
LOC122360972 NA non-coding upstream 180385 20414210 ~ 20422189 (+)
G114707 NA non-coding upstream 188685 20413557 ~ 20413889 (+)
LOC122359979 NA non-coding upstream 360030 20234998 ~ 20242544 (+)
G114593 NA non-coding upstream 520528 20079873 ~ 20082046 (+)
G114826 NA non-coding downstream 33182 20637446 ~ 20638640 (+)
LOC122360417 NA non-coding downstream 324438 20928702 ~ 20929441 (+)
G114978 NA non-coding downstream 513885 21118149 ~ 21120532 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding downstream 524864 21129128 ~ 21132105 (+)
trnae-cuc_37 NA non-coding downstream 534617 21138881 ~ 21138952 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 297890 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 375497 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 954768 19643829 ~ 19647806 (+)
G114382 NA other upstream 1273811 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 1309693 19283761 ~ 19292881 (+)
siglec15l NA other downstream 163014 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1245725 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1279645 21883909 ~ 21921531 (+)
G115193 NA other downstream 1372853 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 2305271 22909535 ~ 22915477 (+)

Expression


Co-expression Network