rab42b (rab42b,LOC107705715,LOC107588502,LOC107704972,LOC107755478,LOC107700723,LOC107566931)


Basic Information

Item Value
gene id rab42b
gene name rab42b,LOC107705715,LOC107588502,LOC107704972,LOC107755478,LOC107700723,LOC107566931
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24833517 ~ 24835626 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261007.1
TTAAAGAAACAGATGAGCTAGACAGAAGCTCCCACTCCTACGACGATCAAACAGACTCTGTTCTATGCAGGAAAACACAGGAGAACCCGAGGAACTATGAGTTTATTTTTACCTATGTTTACAATGATAACTTCAAGACCTCTAAGGTAAGAGGTTCTCTGGGGATCCTGGTGGAGTGGCTGTCTTTGATCAACACTAGCCTTTTCATTCGCTGCTTTCATCTGGTTCAAGTCATGGATCTCACTTTGTGGCAGTACCAGTTTCGAGTCATCATGCTTGGAGACTCCACGGTGGGTAAATCATCCATGCTGAAGCGCTACACTGAGGATCTGTTTCTGGAGTGCATCAACCAAACAGTCGGAGTGGACTTCTATGTGCACTTCCTAGAGGTGGAACCTGGggtgagggtcaaactgcaGTTCTGGGACACAGCTGGTCAAGAGAGATTTAGATCTGTGACTCGCTCGTACTACCGTAACTCAGTCGGAGGTCTTCTGGTCTTCGATCTGGGCAACCGTAAATCTTTCGAAAACGTGCAGCAGTGGTACGCAGAGGTGTGTGAACGTGTGCAGCCCTACACTGTGCTCTTTGTGCTGGTGGGACACAAAAGTGACCGGGTCAAAGCTGGAGAGCGAGCCGTGGACCGAACTGAGGCAGAAAAGCTCGCAAGCAAACTGGGAGCACCATACATCGAGGCCTCTGCCAAAACAGGTCACAATGTGAAAGAGGCCTTTGAACTCTTGACCCGGAGGGTTTATCAGGGCATAAAAAGTGGAGAGATCCAGTTGCGTGAAGGGTGGGACGGAGTCAAGAGCTCGGCGCCTACAGCCCAAACACTCCAGAAGATACAAAACGGTGAAGCCGCTGAGAAAAACAAGAGCTGTGCTTGTTAACTTGCAATATGTGGTTCTCGTTAATTTTGATTGTAGATCTTCAAATAGAATGGATGTGTCCCAGATTGCcaaatgcacataaatgcaaatattaaaggTCTTTCAGATTGTAGGGA
>XM_043261008.1
TTAAAGAAACAGATGAGCTAGACAGAAGCTCCCACTCCTACGACGATCAAACAGACTCTGTTCTATGCAGGAAAACACAGGAGAACCCGAGGAACTATGAGTTTATTTTTACCTATGTTTACAATGATAACTTCAAGACCTCTAAGTACCAGTTTCGAGTCATCATGCTTGGAGACTCCACGGTGGGTAAATCATCCATGCTGAAGCGCTACACTGAGGATCTGTTTCTGGAGTGCATCAACCAAACAGTCGGAGTGGACTTCTATGTGCACTTCCTAGAGGTGGAACCTGGggtgagggtcaaactgcaGTTCTGGGACACAGCTGGTCAAGAGAGATTTAGATCTGTGACTCGCTCGTACTACCGTAACTCAGTCGGAGGTCTTCTGGTCTTCGATCTGGGCAACCGTAAATCTTTCGAAAACGTGCAGCAGTGGTACGCAGAGGTGTGTGAACGTGTGCAGCCCTACACTGTGCTCTTTGTGCTGGTGGGACACAAAAGTGACCGGGTCAAAGCTGGAGAGCGAGCCGTGGACCGAACTGAGGCAGAAAAGCTCGCAAGCAAACTGGGAGCACCATACATCGAGGCCTCTGCCAAAACAGGTCACAATGTGAAAGAGGCCTTTGAACTCTTGACCCGGAGGGTTTATCAGGGCATAAAAAGTGGAGAGATCCAGTTGCGTGAAGGGTGGGACGGAGTCAAGAGCTCGGCGCCTACAGCCCAAACACTCCAGAAGATACAAAACGGTGAAGCCGCTGAGAAAAACAAGAGCTGTGCTTGTTAACTTGCAATATGTGGTTCTCGTTAATTTTGATTGTAGATCTTCAAATAGAATGGATGTGTCCCAGATTGCcaaatgcacataaatgcaaatattaaaggTCTTTCAGATTGTAGGGA

Function

symbol description
rab42b Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in adaxial cell; epidermis; intermediate cell mass of mesoderm; somite; and ventral mesoderm. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

NR:

description
ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261007.1 True 1009 mRNA 0.48 2 24833517 24835626
XM_043261008.1 False 901 mRNA 0.48 3 24833517 24835626

Neighbor

gene id symbol gene type direction distance location
si:dkey-34d22.1 si:dkey-34d22.1,LOC107755496,LOC107700721,LOC107704969,LOC107705703,LOC107566930,LOC107588520 coding upstream 6143 24814714 ~ 24827374 (+)
paqr7b LOC107704967,LOC107732831,LOC107587883,LOC107700726,LOC107597103 coding upstream 352949 24474132 ~ 24480568 (+)
stmn1b stmn1b,stmn1,LOC107700727,LOC107597104,LOC107587743,LOC103040240 coding upstream 360151 24469623 ~ 24473366 (+)
oprd1b oprd1b,oprd1,LOC107735168,LOC107587885,LOC107704878,LOC107756112,LOC107700731 coding upstream 526376 24299335 ~ 24307141 (+)
tcea3 tcea3,LOC107704963,LOC107734473,LOC107700732,LOC107755299,LOC107597109 coding upstream 542132 24281040 ~ 24291385 (+)
cited4b cited4b,LOC107705696,LOC107704975,LOC107588500,LOC107755532 coding downstream 47247 24882873 ~ 24885215 (+)
si:ch211-1i11.3 LOC107705646,LOC107704978,LOC107588497,LOC107700717,LOC107556089 coding downstream 71751 24907377 ~ 24923942 (+)
map7d1a map7d1a,LOC107705598,LOC107556093,LOC107700716 coding downstream 109610 24945236 ~ 24965236 (+)
thrap3a LOC107705588,LOC107704980,LOC107588494 coding downstream 132560 24968186 ~ 25007299 (+)
sh3d21 LOC107588495,LOC107705578,LOC107700715,LOC107556095 coding downstream 172120 25007746 ~ 25019449 (+)
G115861 pkib,LOC107374466,LOC105417165 non-coding upstream 373198 24452231 ~ 24460319 (+)
G115857 NA non-coding upstream 385832 24446125 ~ 24447685 (+)
G115844 LOC107704843,LOC107587884,LOC107732828,LOC107597105,LOC107755451,LOC108443421,LOC107700728 non-coding upstream 388129 24443714 ~ 24445388 (+)
G115850 NA non-coding upstream 392288 24432855 ~ 24441229 (+)
G115796 NA non-coding upstream 747737 24084498 ~ 24085780 (+)
G116029 NA non-coding downstream 345 24835971 ~ 24836917 (+)
G116039 NA non-coding downstream 7796 24843422 ~ 24845130 (+)
G116043 NA non-coding downstream 50088 24885714 ~ 24886355 (+)
G116048 NA non-coding downstream 54649 24890275 ~ 24890562 (+)
G116072 NA non-coding downstream 231772 25067398 ~ 25070377 (+)
LOC122360598 NA other upstream 899 24773819 ~ 24832618 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 1011071 23815924 ~ 23822446 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 1221124 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 1474738 23274989 ~ 23358779 (+)
G115449 NA other upstream 1578951 23251382 ~ 23254566 (+)
G116057 NA other downstream 167636 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 717237 25552863 ~ 25554807 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 882894 25718520 ~ 25778407 (+)
hmgn2 NA other downstream 1377106 26212732 ~ 26215779 (+)
G116445 ubr5 other downstream 2005754 26841380 ~ 26842025 (+)

Expression


Co-expression Network