scxb (scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100)


Basic Information

Item Value
gene id scxb
gene name scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18539263 ~ 18542637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261117.1
ctcattcacacacacgtCTGGGAGGCGACTTGGCATGCTGTGAGCCCAAATAACCGATGACAGTCGAGAAAAGAGCATTTCTTATGAATGAGCGAGTCAGAAGTGACTCGGTCAAGCATCGCTGGATTGGTTGGATCCCTAAAGCCAGACTGGTTACAGAAGCTAGTCACTTCGCATGCAGACCATAGACTGTGATGTGCGATTAGAAATTGGGATCGAGTTCACTGCAGTGTTTGCTCAAAGTAGAACGATCCAACAGAGATCTCCGTGCAAGGACAAAAAGCAAAGTCCAGGGGGCCTGTAGGGTGCTGAGCATGTCTTTTGCGATGGTGCGACCAACCCCAGGTCATTTCTTGTGCTCTGAGATCACCATGCACTCTGAGGATGACGACAACGGCAGTGAAGGTTCTGGATCTGACGACAAGTCCTTCCGAATGGCCGGCCACGACTACGGCGCATTTAAGTTGGGCGCTCGCAAAAAGAGGTACGGCTGTCGACCGGTTGCAGCTCCCAGCGAACTCCGTCCTCAGATCGTCGAGATACGGCAGAGGAACGCCGCAAACGCCCGAGAGCGGGATCGCACGAACAGTGTGAACACGGCGTTCACCGCGCTGAGGACGCTTATACCCACCGAACCGGCGGACAGGAAGCTGTCTAAGATTGAGACGCTGCGGTTGGCCTCCAGCTACATCTCGCACCTGGGGAACGTGCTGCTGGTTGGAGAGGAGTGTGGAGACGGCCAGCCTTGTCTCAGGAGCTCGGGAGCCTTGTATCATCACCTCCACAACCTTCCAAAGACCTCGACACCCAGCCCGGATTCAGAAAACTCACAGCCCAGACAGATCTGCACATTCTGCCTTGGTAACCAGAGACGGCTGaacaaagacagagaaagaaaaactgcaTTAAGAAGTTaatgatgagcagaagagagtGTTTCCATCACATCCATCTGAAGAAGAGTTGAGCCGGAGCGTACTGAACATTTAGTGTACTTTTGCTGTAAATAAGCTGTTAAATTGAATGCAACTTTTTAACCAACTTACTGGTGGACAATGTCATAATGGACACTGCATTCCGCACTTCCATATTTAGAAGCCAAAACCTAtgtgaatttcatttttgaacctcttttttgttttatatagaGGTGATATACTTTTATAGAAAAGTTCTAGGGAggatttgcaatttaaaaaacaaaaagaaaaaaaaaatggaggaaaaaaaggaCTTGCTTGTTAACCAGCAAAGAACCTGTTTGTGTCCTTTTGGGTTTGTCTGTGATGCGTATGTTTTGTATGCACTACACTGaactttatttacaaatgtcGAAACATGGGCTTTTTTCCTATCAGAACACATTACCTACAGTACAATCGAACTTCAATGTCAAGGAGTTGCTGGTTATTCTGTCAcgattattgtt

Function

symbol description
scxb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within tendon formation. Is expressed in adductor mandibulae; caudal fin; extraocular musculature; sternohyoid; and vertical myoseptum. Orthologous to human SCX (scleraxis bHLH transcription factor).

NR:

description
PREDICTED: basic helix-loop-helix transcription factor scleraxis-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261117.1 True 1429 mRNA 0.47 2 18539263 18542637

Neighbor

gene id symbol gene type direction distance location
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding upstream 299938 18232044 ~ 18239325 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding upstream 317327 18221031 ~ 18221936 (+)
pear1 pear1,LOC107741736,LOC107587815,LOC107704888,LOC107671660,LOC107597999,LOC107732476 coding upstream 344453 18160023 ~ 18194810 (+)
tmem79b tmem79b,LOC107741741,LOC107704887,LOC107587819,LOC107732471,LOC107597995 coding upstream 395284 18139916 ~ 18143979 (+)
sema6e sema6e,LOC107587820,LOC107741742,LOC107732474,LOC107597993,LOC107663405 coding upstream 416837 17997797 ~ 18122426 (+)
ndrg1b ndrg1b coding downstream 49631 18592268 ~ 18596824 (+)
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding downstream 66345 18608982 ~ 18612472 (+)
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding downstream 129322 18671959 ~ 18673711 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding downstream 140682 18683319 ~ 18684515 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding downstream 161766 18704403 ~ 18751686 (+)
G113988 NA non-coding upstream 161622 18320745 ~ 18377641 (+)
G113969 NA non-coding upstream 254499 18284154 ~ 18284764 (+)
G113954 lmna,LOC107741735,LOC107587813,LOC107704890,LOC107598000,LOC107671682,LOC107723101 non-coding upstream 338834 18199250 ~ 18200429 (+)
G113942 LOC107587908,LOC100536175,LOC103025787 non-coding upstream 402274 18133886 ~ 18136989 (+)
LOC122359994 NA non-coding upstream 605786 17892970 ~ 17933477 (+)
G114103 NA non-coding downstream 17577 18560214 ~ 18560969 (+)
G114104 NA non-coding downstream 18643 18561280 ~ 18561911 (+)
LOC122360728 NA non-coding downstream 108136 18650773 ~ 18653605 (+)
G114172 NA non-coding downstream 121191 18663828 ~ 18664762 (+)
G114175 NA non-coding downstream 125208 18667845 ~ 18669187 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 691853 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 801781 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 1132067 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 1627382 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1715280 16767060 ~ 16823983 (+)
G114131 NA other downstream 105908 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 132923 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 215668 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 266107 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 284617 18827254 ~ 18841584 (+)

Expression


Co-expression Network