LOC122360859 (LOC107668277,LOC107592573,LOC107713820)


Basic Information

Item Value
gene id LOC122360859
gene name LOC107668277,LOC107592573,LOC107713820
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20747331 ~ 20751315 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261707.1
ATGTGCCTGAGCTgctggaaaaacacacaaaagaagattATTTTGCTCAGAGAGTGGAAGACCTGTGATCTTGAAGCATCGGctTGGTTGAACCTCAGTAGCTGCTCAATCAACTGTCCTGAGAACCAAAGAGTGACCATGATGCTGTTTCATCTTCTCTTCATGTCATTGGTTTGCTCGGGAGTGTCGGTGGAGAACTATGGAAAATACTTCATCACGGCATTCCCAGAAAACATTGCCTACTATCATCCACAGGAGTCCTCCAACACACTCCAAATGACTGCTTTTTACGACGACACCCTCGTCTCGATCACCATCAACCACACAAACGTGTATAACGATACACTACAATCTGGGCAGACTAAAATTGTGCACTTTCCCAAGTACATCGAGCAATATCGGTTCACAAAATCCCTGTTTTTAGTCAAAGTCAACAGCACTGAAAAGATTGTGGTGCTTTGGCTCAGTAAGCGCGGCGACAGCGTCCAGTCAAACTTCGTTCAACCTCTAAGAAACCTCGGAAAGTGGTATTCGATCCCATTTATCAATTACAATCAGATGATGGCGTCCTTGTACAATATGTCAGATCAGTTAGCTCCGGACAACTGGAGATACAATTCGTTCAGGCTGATCGTCATCAACGCTGAGCACACCGTAAACTTCATCACCGTCCAAAGTATCAGCCCGGAcggtcaaaaaacatttaacattactCTCAAGCCTTACGAACTTTACCAGATCCAAACTAATGGTTCAAACGTAAAACTGTACTCCAGTGCCATCATGGCTGTGCTGTTAACCCACCCTTGTGTAGAAACTACCGGATGTGATTGCAATATGGTGGTGAGCCACGTTCTCCCCCAAAATCTGTGGGGTGACACATTTGTTGTGCCGTCGTTGAAGAACCTGAATACAGCGTGGCTTCAGGTGACTAACACGACAAAAATAAGGCTCAATGGCAGGAATATAAAAACTCAAGAGTCCAATTCTTCAGAGCTTATTCCCTTCCCAGACCTCAAGAGAGCATCTCAGTTCATCAGCGCATCAAATGAGGTGTCCATCAGACTTATCAGTCCAGGCCTCGTCTTAGAACTCATACCAGAAACCATGTTCGCTGCTTGTTACCTGGTTCAGATCAACTCCACAGAAGGCGAGGCTGTTATCATAGCTGAAACAGCCAGTAAGAACAGTGTATATATAGACGGCAAAGTACTAAAATCCACTGACTGGAAACCCATTCCCAATTCAAACTACTCTTCAATATCTGTGTCGCTTAATGGCATGCATGTCATCTGGCATCCAACCTCCAAGATCGGAGTTTACAGGTTTGAGAAGATGGAGAGTGGAATTCCTTACGGAAGCCCGGCTATCGTTTTAAATGAAGACCCAGATCGCGATGGCTGTGTGGCAGATTCTGCACAATTTATAACCACTACTGATGTGATGACATGGCCCCAGTCCCATCATTACTGCCTAAATATATCTTACCAGCTGAGCACACCAAGCAGCGAAATGGCCCAAAAAGAGTTGACTAGTTTTCTGCAAAACAACGGAAGTCACGGGTATCTCTGGATTGGTCTGCGACGCAGTCTCTCCACATTAGAGTGGTACTGGCAGAAAGGCAATGACAGCGAATACAGCGTGAGCTACACGAAGTGGGCTGATGGGCATCCGGATAAGCCCTGGAAAGCTTTGTGCGCTGCTGTGTCCCAAGACGCCAACAAAGAGTTTTCCTGGAAGAGCATGTCCTGTTGCACTAAGCTGAGGCCCATCTGCTACAAACAGGGCAAATACTTTAATGATATGACCTTTAATACACTGTATGATCAGTTTAGCATTACTTACCCAAAGGTCTGTTCTTCTTGCCAAAATTCCTAACATGAATTTAGTAACTGCGATGATAATTCATATCACAAAATTTAGTCACGGTTCTTAATAAAAAATCATCGAATTTGTTCAATATTCTCAtcaatattcacatttaaaaatatacggATCTTCTGaaaacacaatataactacatattattactaatatatgATATTTCAGGGCTTCATGTTATATTATTGCACAAACTACAGCTGAACAGCCTCTAAAACATGACAActatcaaaacattaatatcTGATGTAATGCGAAGTGATCTAAAATGAAGACAAATAAAAGTCAAATCAACTTCTTTTGTAGGGGAATACAAATGTATGTCACAAAATCACAGTCCTCTTTCTTTCACCAAAGGCACCTTCAAGCCTATTTAGCCTTATGCCTGTGCATTATGGGTGTGTTTACCTCTGCTGGTTGACTTTTTTCAGCTCACCATCGCCTTCTTTCTGTGATGTCATTTAGCTAAATCACGGGTTGTAGTCTTTTAATCACAGAAATCTACAGACATAATCAGGCAAAAGTAAGCATTTCATTCAATCATAAACATGGTTTTGCTTGTCATTTTGCATGACCT

Function

NR:

description
PREDICTED: IgGFc-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261707.1 True 2458 mRNA 0.42 4 20747331 20751315

Neighbor

gene id symbol gene type direction distance location
LOC122360262 NA coding upstream 352 20741818 ~ 20746979 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107600500,LOC107668304 coding upstream 10171 20707026 ~ 20737160 (+)
cep85 LOC107717359,LOC107600497,LOC107666796 coding upstream 47482 20687866 ~ 20699849 (+)
si:dkey-199f5.8 si:dkey-199f5.8,LOC107717362,LOC107666799,LOC107713844,LOC107592109,LOC107668306,LOC106605235 coding upstream 67130 20661662 ~ 20680201 (+)
psmc4 psmc4,LOC107719110 coding upstream 87542 20654160 ~ 20659789 (+)
LOC122360694 NA coding downstream 458 20751773 ~ 20755366 (+)
rpp25l rpp25l,LOC107666877,LOC107600503,LOC107717368,LOC107713839,LOC107592013,LOC107668321 coding downstream 5680 20756995 ~ 20759232 (+)
LOC122361050 LOC107717367,LOC107666876 coding downstream 8053 20759368 ~ 20764347 (+)
cmtm7 cmtm7,LOC107666776,LOC107717357,LOC107668286,LOC107600545,LOC107592881,LOC107713818 coding downstream 19149 20770464 ~ 20774378 (+)
cmtm6 LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799 coding downstream 26765 20778080 ~ 20784441 (+)
G114826 NA non-coding upstream 108691 20637446 ~ 20638640 (+)
G114813 NA non-coding upstream 160504 20586060 ~ 20586827 (+)
LOC122360972 NA non-coding upstream 325142 20414210 ~ 20422189 (+)
G114707 NA non-coding upstream 333442 20413557 ~ 20413889 (+)
LOC122359979 NA non-coding upstream 504787 20234998 ~ 20242544 (+)
LOC122360417 NA non-coding downstream 177387 20928702 ~ 20929441 (+)
G114978 NA non-coding downstream 366834 21118149 ~ 21120532 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding downstream 377813 21129128 ~ 21132105 (+)
trnae-cuc_37 NA non-coding downstream 387566 21138881 ~ 21138952 (+)
G114983 NA non-coding downstream 389727 21141042 ~ 21142030 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 442647 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 520254 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1099525 19643829 ~ 19647806 (+)
G114382 NA other upstream 1418568 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 1454450 19283761 ~ 19292881 (+)
siglec15l NA other downstream 15963 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1098674 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1132594 21883909 ~ 21921531 (+)
G115193 NA other downstream 1225802 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 2158220 22909535 ~ 22915477 (+)

Expression


Co-expression Network