LOC122359979


Basic Information

Item Value
gene id LOC122359979
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20234998 ~ 20242544 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252748.1
TTTGTCGAGTTTAGTTTACTTAAAGTATTCGTCAGAAAACGCCTACGAACGAAACATCACTGATACTTTGAGTGCACTcaCACGGCCATCTAGACAGAGCTCTGCATCCTAATTTCCATAACTGAAGGACAGAAGACATCTCCTGGCCTCCTTAGCTGGAATATTTGCCTGACAGATTGCGTCTAGGCCTGGTAATCACTTCTCTTCTGCTGTGGGAGTTCAGGGTCTGGCTGCAGACGTGCACACCTGCTGTTCGGGAGGTCATATGCGCTCCCTACAGAGGAAATGGATCCCTTTATCCGTTAAGCATGTTTTATtcgatttttgttttaactctgtgagaaaactttttttttattcagtcaaCTCTTTTGAAGAGATTTTGAACAGAGTTGAATACAGTTTTGGAATTTctagcaaaaataaattgtaaaaacataatatttctcGCCATGAAAATAGCTTGAAATAAGCTTGAATGgcattaaacacaaacaaacaacaaccaGAAGATTTGGAAAGCTACGTGGATattgctgacaaaaaaaacaagcaaaaaaacgaGCAAATATTTTTACGATGTAGTATATATGGGATTTTTAGCTTGAAATTTCTCTGCAAGCATGCCGAACATAGACATATTATTCAATGGATGTATTGTAGTTCTCTGTAAAggaaaatatcatttaaaaataaatcagaatatattacacattttttgatTTCTGAATATCAG
>XR_006252749.1
TTTGTCGAGTTTAGTTTACTTAAAGTATTCGTCAGAAAACGCCTACGAACGAAACATCACTGATACTTTGAGTGCACTcaCACGGCCATCTAGACAGAGCTCTGCATCCTAATTTCCATAACTGAAGGACAGAAGACATCTCCTGGCCTCCTTAGCTGGAATATTTGCCTGGTCTTCCTAAAGTCTGCATGGCAAGGAAATGCAGGGCGTCTTCCGATCTGACCTTTCTTGGGTGCAGCTGGACGGATGTAAAAGGGGAGCGTCTTCATGGCTCCTCTGAACTCCTGTT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252748.1 True 736 lncRNA 0.36 3 20234998 20237858
XR_006252749.1 False 289 lncRNA 0.47 3 20234998 20242544

Neighbor

gene id symbol gene type direction distance location
txnipb txnip,LOC107666757,LOC107592283,LOC107686154,LOC107714329 coding upstream 3669 20227503 ~ 20231329 (+)
thbs3a thbs3a,thbs3,LOC107666739,LOC107714313,LOC107719129,LOC107686644,LOC107592643 coding upstream 17846 20203095 ~ 20217152 (+)
mtx1a mtx1a,LOC107719130,LOC107666872,LOC107592422,LOC107686169,LOC107592302,LOC107714314 coding upstream 33622 20191045 ~ 20201376 (+)
nudt17 nudt17,LOC107666849,LOC107719132 coding upstream 53141 20175926 ~ 20181857 (+)
si:dkey-7j14.5 si:dkey-7j14.5,LOC107719133,LOC107666850,LOC107592309,LOC107686177,LOC108269355,LOC108436563 coding upstream 59547 20170492 ~ 20175451 (+)
LOC122361080 ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270,LOC107686108 coding downstream 2690 20245234 ~ 20257491 (+)
tbx20 tbx20,LOC107719124,LOC107600539,LOC107592953,LOC107686728,LOC107666841,LOC107737833 coding downstream 124447 20366991 ~ 20376376 (+)
smarcc1a smarcc1,smarcc1a,LOC107600486,LOC107686050,LOC107666814,LOC107592245 coding downstream 152169 20394713 ~ 20409623 (+)
cspg5a LOC107719119,LOC107666839,LOC107686028 coding downstream 181464 20424008 ~ 20452450 (+)
ppox ppox,LOC107666759,LOC107737816 coding downstream 215731 20458275 ~ 20467391 (+)
G114593 NA non-coding upstream 152952 20079873 ~ 20082046 (+)
G114578 NA non-coding upstream 156216 20021729 ~ 20078782 (+)
G114589 NA non-coding upstream 194410 20038574 ~ 20040588 (+)
G114585 NA non-coding upstream 205366 20026841 ~ 20029632 (+)
G114582 NA non-coding upstream 216827 20016710 ~ 20018171 (+)
G114707 NA non-coding downstream 171013 20413557 ~ 20413889 (+)
LOC122360972 NA non-coding downstream 171666 20414210 ~ 20422189 (+)
G114813 NA non-coding downstream 343516 20586060 ~ 20586827 (+)
G114826 NA non-coding downstream 394902 20637446 ~ 20638640 (+)
LOC122360417 NA non-coding downstream 686158 20928702 ~ 20929441 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 7921 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 587192 19643829 ~ 19647806 (+)
G114382 NA other upstream 906235 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 942117 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 951483 19280383 ~ 19283515 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 24997 20267541 ~ 20304684 (+)
siglec15l NA other downstream 524734 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1607445 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1641365 21883909 ~ 21921531 (+)
G115193 NA other downstream 1734573 21977117 ~ 21979368 (+)

Expression


Co-expression Network