G11518


Basic Information

Item Value
gene id G11518
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18054128 ~ 18059456 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU12724
TCTCCTAACTGGCCGCATTCGTGCTCAGAGTAATGAACGATGGGGGGCGGTGAAGGGGGCCGTAGACGGTCCTCCTCTATCCTGCGACGGTGCCTCTCTTCCCGGGCCAGCATGCGCTGTCTGCACTCCCACTCGTACAGGTCATCTCGAGCCTGAGCGAAATCTACATGCAGCCGGCCTGTGTCCTTCTTATCTGTGCTTGATCCCAGCCTGATCCTATAACCTGACAGGAAGAGGGCCTTGTCCACTGTGTGCTCCTCGGCGAAACGGATATGACAGAAGTTCTTCTTGCTCTTGCGGATGGCGATGATACCTCCGCACTGTTCAAACACCTCCACAATGAGCTGCTCTGTTGCGTTCTCTGGCAAACCGCCGACAAACACTGTCTTACAGCCGGGAGGTCTCTCTCTGGTGGCAGGGGGAGGCAGGTCTTTGAAGAAAAGCAAAGAAGATTAAACTACCAGAATTTCTGACATTTTGTTTTATTTAGTTATTGATCTCTTTTTTTTCACCGCATTAA
>TU12725
TCTCCTAACTGGCCGCATTCGTGCTCAGAGTAATGAACGATGGGGGGCGGTGAAGGGGGCCGTAGACGGTCCTCCTCTATCCTGCGACGGTGCCTCTCTTCCCGGGCCAGCATGCGCTGTCTGCACTCCCACTCGTACAGGTCATCTCGAGCCTGAGCGAAATCTACATGCAGCCGGCCTGTGTCCTTCTTATCTGTGCTTGATCCCAGCCTGATCCTATAACCTAGAGGAGAGGAGATAGAAATGGGCAATGACAAAGAACAAGGAAAGGGAAGTGAAGGAAAGGAATGTGGAAATGGAAGAAGGAAGAGAGTAAAGCAAAAGCAAAGGGAAGAATGAGGAAGAGGGAAGGAATGGAAAAGAAAAGAGGAAGGGGAAAGGGTAAAGGGAAAAGGAGTAAAGAAAAAGAAAGGAATGGAGAAGAGAAAAAGGAAGGAGAAAATCAATAGAAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU12724 False 520 lncRNA 0.52 2 18054128 18059456
TU12725 True 454 lncRNA 0.49 2 18054128 18054843

Neighbor

gene id symbol gene type direction distance location
CI01000000_17897786_17904428 MARS2 coding upstream 149559 17897728 ~ 17904569 (+)
CI01000000_17858551_17862300 FGF1A coding upstream 191808 17856808 ~ 17862320 (+)
CI01000000_17831876_17854247 NR3C1 coding upstream 199695 17830760 ~ 17854433 (+)
CI01000000_17729584_17730495 NA coding upstream 323529 17729584 ~ 17730599 (+)
CI01000000_17672091_17673742 MSX2A coding upstream 378986 17671672 ~ 17675142 (+)
CI01000000_18144240_18154922 NA coding downstream 83653 18143109 ~ 18155084 (+)
CI01000000_18441823_18447239 NA coding downstream 380992 18440448 ~ 18447454 (+)
CI01000000_18586406_18593775 NA coding downstream 526950 18586406 ~ 18593775 (+)
CI01000000_18651815_18661568 FBXL21 coding downstream 592034 18651490 ~ 18661655 (+)
CI01000000_18785690_18788783 NUDCD2 coding downstream 725907 18785363 ~ 18789045 (+)
G11513 NA non-coding upstream 63508 17984782 ~ 17990620 (+)
G11506 NA non-coding upstream 73476 17966308 ~ 17980652 (+)
G11473 NA non-coding upstream 134973 17913342 ~ 17919155 (+)
G11467 NA non-coding upstream 136825 17915550 ~ 17917303 (+)
G11465 NA non-coding upstream 166666 17883953 ~ 17887462 (+)
G11589 NA non-coding downstream 64308 18123764 ~ 18166384 (+)
G11669 NA non-coding downstream 180167 18239623 ~ 18269824 (+)
G11695 NA non-coding downstream 240509 18299965 ~ 18310866 (+)
G11665 NA non-coding downstream 294512 18353968 ~ 18406846 (+)
G11714 NA non-coding downstream 315061 18374517 ~ 18385384 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other upstream 707928 17339154 ~ 17346200 (+)
G10201 NA other upstream 2123566 15930266 ~ 15930562 (+)
G9201 NA other upstream 3819187 14215024 ~ 14234941 (+)
G7522 NA other upstream 5875120 12178369 ~ 12179008 (+)
G11801 NA other downstream 621411 18674116 ~ 18745376 (+)

Expression


Co-expression Network