CI01000001_00483853_00488761 (VWA1)


Basic Information

Item Value
gene id CI01000001_00483853_00488761
gene name VWA1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 483853 ~ 488825 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00483853_00488761.mRNA
TTTTAAACTGCTGCGAGGGCGATGTCCTGTTTCTCCTGGACTCCTCTGGTAGCGTGGCCTCCTACGAGTTCTCCCGTATGGTGGACTTCCTGTCGGAGCTCCTGCTGCCTTTCTCGTTAGGGCCGGATGAGGTGAGGGTGGGACTGCTGCAGGTTGGGACCGAACCCCATCTCGAGTTCGGCTTTGACACCTACAGCTCCCAGCAAGGACTGCAGGCAGCCCTGGAGAGGACTAGACAGCTAAAGGGTGACACCAACACGGTGGATGCTCTACTGTTGGCTAGGAAACAAGTTTTGAAACAGGGTGTGCCAGGAGGTGCCAGACCAGATCTGCCCAGGGTTCTGGTTTGGCTCACGGATGGAGTGGATCCCGGCGAGGTGCAGGAACCAATGGCGAGGCTGCGAGAAGAGGGCGTGGCTGTACTGGTGGTTTCCACTGGTCATGGGAACTACCAGGTGCTGAGAGATGTCGTAAGTCCACCCAAAGAGGAGCACCTGTTCTTTGTGGACATTGACGATATCAACATCATCAGCGAAGACTTGAGGAATGCAATTATTGTGGCTCAGCCGGAGGTCCAGACTCTCTCCACAGTGACGGTATCCGAGTCGAGCAGCAGCAGTGTGCGTGTGAGCTGGGCTCCGCTGCTGCCTCATCTCATACAGGCCTACCAGGTGGAGTACTCAGCTCTTCCTTCAGGGCCGCTCCGGGTGATCAGCGTCAATAACAGGCAGGACTCCATAGTCCTTACTGACCTCCAGCCCGACACGCAGTACCTGGTCACTATAAGCGCAAGACAGTCCTCTGGCAAAGAGAGAGCCATGTCGGTTAAAGCCTGTACACAGGAAGTGCTGCCGGCTCTCTCTGATCTGCAGCTGACCACTGTGGGCAATGAGTCAGTGCAGCTCCGGTGGAAGGGGAATTACGACGGGCTCCGCGGTTACTGGGTCACATGGGAGCGAGGTCAGAGCCAGCGCTCCACCCTGTATTTACCACCCAACCGCCTGTCCACCACCCTCAACCATGTACCCTCCAGAGCCCGTGTCTGCGTCTCCCCGGTGTACCGGACGGCTCGTGGCGAGGGTCTCTGCTGCACTGCTTAGATCTGGTCTCCGGTGAGACACCCGTCTGTAGAACATGGGGATTATAGGTTATTTTATGTTATGA

Function

symbol description
vwa1 Predicted to be active in collagen-containing extracellular matrix. Orthologous to human VWA1 (von Willebrand factor A domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00483853_00488761.mRNA False 1164 mRNA 0.57 3 483853 488825

Neighbor

gene id symbol gene type direction distance location
CI01000001_00440891_00444667 HTR6 coding upstream 38870 440891 ~ 444983 (+)
CI01000001_00436821_00439097 NA coding upstream 44123 436731 ~ 439752 (+)
CI01000001_00433013_00435064 NA coding upstream 48314 433013 ~ 435539 (+)
CI01000001_00426295_00431004 IYD coding upstream 52621 426065 ~ 431232 (+)
CI01000001_00400604_00401694 NA coding upstream 81929 400425 ~ 401924 (+)
CI01000001_01088316_01091350 TSHZ2 coding downstream 599491 1088316 ~ 1091578 (+)
CI01000001_01168378_01169553 NA coding downstream 678692 1167517 ~ 1169642 (+)
CI01000001_01209204_01212045 PFDN4 coding downstream 720379 1209204 ~ 1212252 (+)
CI01000001_01248946_01251200 NA coding downstream 760121 1248946 ~ 1252096 (+)
CI01000001_01357469_01365104 NA coding downstream 868442 1357267 ~ 1365576 (+)
G12664 NA non-coding upstream 15420 468102 ~ 468433 (+)
G12656 NA non-coding upstream 64618 418962 ~ 419235 (+)
G12648 NA non-coding upstream 67012 414496 ~ 416841 (+)
G12629 NA non-coding upstream 110368 372764 ~ 373485 (+)
G12674 NA non-coding downstream 15662 504487 ~ 504749 (+)
G12685 NA non-coding downstream 35649 524474 ~ 538363 (+)
G12686 NA non-coding downstream 50871 539696 ~ 545356 (+)
G12698 NA non-coding downstream 63628 552453 ~ 552967 (+)
G12699 NA non-coding downstream 64192 553017 ~ 553949 (+)
G12614 NA other upstream 172912 309144 ~ 310941 (+)
G13051 NA other downstream 554888 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1179195 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3127423 3618075 ~ 3621451 (+)
G15794 NA other downstream 4572393 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 4797924 5279837 ~ 5287698 (+)

Expression


Co-expression Network