LOC122323196 (v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349)


Basic Information

Item Value
gene id LOC122323196
gene name v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5619470 ~ 5624977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184052
TCATATTCTGTGCTGTATGGATCACATTTATTCCAGCTTATGTCAGCTCTCCAGGGAAATTTACTGTAGCTGTGGagatttttgccattttagcttCAAGCTTTGGCTTaagtttctgtatttttgctcctaagtgttttattattgtgtttagGCCAGAGCAGAATACTAAAAAACACTTAATGGGTAAAGTACCATCAGCCAACTAAAGCCACCTAAGACAAGGACAGCTCTCATTCACATGAAATGTTACAATATTGCGATGTATGAAGCATCTTTCTGAGTTCAAagactactttttaaaatataaccatTTTATAAGAGAAAGAAATATCACTATCGCCCATATGCAAACATCTCAGATTCTCAAAATTGGTTGCCAGTGAAAtgtagtgtatgtatatacataacaGTAATATTTGCTCACCAAGCCCACATTCGTTTTGAACCAAAGTACAACAAAAATAGtcaaatgttgaaatatttcactattttaaaaatctgttttctattagaatacagtatatttttaaatataattaattcctgtgattTCACTCAATTTGTTGTAACATCATTCCAGTCACtatttccttcagaaatcatagtAATGTTCTGATTTGCtgttgagaaaaataaataaataaaataaagtaaattatacATAGATGTTTAACCTTCTAGTATTGTTCTGGTAACCTGATTGGATTGATGTTTGTGTTACGACCCATTGCCTGTTTTATCGTCTTTTCTATCTGGAAATCCCTTGAACTTGTTTGCGGATCTGACTGCCTTACTGTTAACAAACTTCTGCCTGTTGTATCTGACTATTCTATTTTGGATTGTCCCAATAAACTTCCG
>XM_043216887.1
TTTTTGGTAATACAGTTACCTACAACAGCAGTGACTGTGatggttatatatataacacaaggCATCATTTTAAACTCACATTTGGAGTGTTTTCTTGTCTAGCAAGAGAAATGCATGTTAATCTTTTATTGACCCTGACACTACTTTGTATTACCAGGCTCTGCCCTGCTGTGTGTGGGATTCATTTAAACAGCTGCATCCTCCAAGGTGACCCTCAGCCCCCTGCTCTCTTTGATGACGGAGACTTTGTCATTGGAGGGGCTTTCACCATTCATTATTATGTGAGGACAGAGAAGCAGACCTACACTCAACGGCCACAACCACTTGTGTGCAGTGGCAGCATGAACTTCAGAGAACTGCACTTTGCTCGTGCCTTACAGTTTGCTATCCAAGAGATAAACTACAGCTCCGATCTCTTACCAGGCATCACTTTAGGGTACCACATATATGACACTTGTGCCTCTCTGGCAATGGCAATCAAAGTAGCACTGCAACTTGTCAACGGACAAGAGCCTGTATTTAATGACACTGATTCCTGTGTAAAAAGTAATGCTGTTCCAACACTAATTGGAAATTCAGCTTCCACTGCAGCTATAAGTGTTTCAAGACTTTTTGGTCCTCTTAGAATTACACAGGTGAGTCATTACGCGACGTGTGCGTGTCTCAGTGACAAGCGGCAGCATCCTACTTTCTTCAGGACCATCCCCAGTGACCACCATCAGGCGGCAGCACTGGCACGGATGGTCAAGCACTTCGGATGGACGTGGATCGGGGCTGTGCGCAGTGATTCAGACTATGGGAACAATGGCATGGCATCATTCCTGAAAGCTGCTGAGGAGGAAGGGATCTGTGTGGAGTATTCTGAGGCCTACTACAGGACCCAGCCGCGCAGCAAACTGAAAAGAGTGGCGGATGTCATTCGCAAGTCATCAGCTCGTGTGATTGTTGCCTTTATGGCCGAAGGTGACATGAGACTTCTGTTAGAAGAGTTGAGCCAGCAGCCTCCTCCTCCGATGCAGTGGATTGGCAGCGAAGCGTGGGTTACAGACCCACAAATGATGCGGTTTAATTTGTGTATCGGTGCTGTTGGTTTTGCAGTTCCACGGTCTGTTATTCCGGGTTTTCGCAACTTTCTACTCGACCTGTCTCCAGAACAAGTGCTAAAATTCCCCCTGCTGACAGAATTCTGGGAAAGCTCATTCAGCTGTAGTCTAAAACAGCACACAGGTTCTTCTACTGATATGCCAGCATGTGATGGCACAGAAAACCTGCGCGCTTTACAGAACCCGTATACAGACACGTCCTATTTGGTGTACAAAGCCACTTACGCTATAGCTCATGCCCTCCATGGCATCATCTGTAATGAAATGCTATGTGACAAAAACACCAAAGTTGAGCCCCGGCAGGTTTTTGATCAACTCAAGCGATTGAActtcactaaaaataattattttgtttcatttgactCCAATGGAGACCCTGTGGCTACCTATGAATTTGTGAACTGGCAGCTTCATGGAGAAGGTTCAGTTGATTTTGTGACAGTGGGTCAATATGATGCATCCAAGCCTAAAGGCCAAGAATTCAGTCTGAGCAGAGCTATCATTTGGTATGACGGCAGTGAAAAGGtgcctgtgtctgtgtgcagtgAGAGCTGTCCTCCAGGTACAAGGAAGGCTGCACAGAAAGGAAGACCGGTCTGCTGTTACGACTGCATTGACTGTGCAGAAGGAGAGATCAGTAACGAGACagATTCTCTAGATTGTCACGAATGTCTACCTGAGTATTGGCCCAATGGTGAGAAGGACAAGTGTCTTCCTAAACCAGTGGAGTTTCTCTCCTGGGATGAGATCCTTGGGATTATACTGGCTGCTTTCTCTGTTGCTGGCTCTTTAGTGGCTTTGAGCATAACTTTAGTCTTCTACAAAAACAGGGCCTCTCCGATAGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTTCtcttctcactctctctgtgtttccTCTGTTCTCTTACTTTCATTGGTCGGCCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTCCTCTGTATCTCTTGTGTTTTGGGGAAAACTATAGTGGTGTTAATGGCCTTTAAAGCTACACTtccaggaagtgatgtcatgaaatggtttgggcCTCCTCAACAGAGACTCAGTGTTTTGGGCTTCACTCTTGTACAGGTACTTATATGTGTTCTTTGGTTAACAATATCTCCACCTTTTCCTTATAACAATATGCAACACTACAAAGAAAAGATCATTCTAGAATGCAGTTTAGGATCAGCTGTAGGTTTCTGGGCTGTTCTGGGTTATATTGGTCTCCTGGCAttcctttgctttgttttagcTTTTCTTGCCCGAAAGCTTCCTGATAACTTCAATGAAGCTAAGTTCATCACATTCAGTATGCTCATATTCTGTGCTGTATGGATCACATTTATTCCAGCTTATGTCAGCTCTCCAGGGAAATTTACTGTAGCTGTGGagatttttgccattttagcttCAAGCTTTGGCTTaagtttctgtatttttgctcctaagtgttttattattgtgtttagGCCAGAGCAGAATACTAAAAAACACTTAATGGGTAAAGTACCATCAGCCAACTAAAGCCACCTAAGACAAGGACAGCTCTCATTCACATGAAATGTTACAATATTGCGATGTATGAAGCATCTTTCTGAGTTCAAagactactttttaaaatataaccatTTTATAAGAGAAAGAAATATCACTATCGCCCATATGCAAACATCTCAGATTCTCAAAATTGGTTGCCAGTGAAAtgtagtgtatgtatatacataacaGTAATATTTGCTCACCAAGCCCACATTCGTTTTGAACCAAAGTACAACAAAAATAGtcaaatgttgaaatatttcactattttaaaaatctgttttctattagaatacagtatatttttaaatataattaattcctgtgattTCACTCAATTTGTTGTAACATCATTCCAGTCACtatttccttcagaaatcatagtAATGTTCTGATTTGCtgttgagaaaaataaataaataaaataaagtaaattatacATAGATGTTTAACCTTCTAGTATTGTTCACTTGGGGGTCACACTTGTATTGTTCGTGGTTAAAACTTACTGAAAATCcaaaaattacctttttttttaataaagttttcttttgtattttgagaGAATGTCATATGAaactaattcatatttattgaattaGGGCTTTCGCCCGAGTGCTGACCTTGCCTGCTTGCCTGCTTATCTTGACCATTGTCTCTTCGGATCACCCTTGTGTTCTGGTAACCTGATTGGATTGATGTTTGTGTTACGACCCATTGCCTGTTTTATCGTCTTTTCTATCTGGAAATCCCTTGAACTTGTTTGCGGATCTGACTGCCTTACTGTTAACAAACTTCTGCCTGTTGTATCTGACTATTCTATTTTGGATTGTCCCAATAAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184052 False 861 lncRNA 0.33 2 5623906 5624977
XM_043216887.1 True 3520 mRNA 0.42 6 5619470 5624971

Neighbor

gene id symbol gene type direction distance location
LOC122323189 v2ra18,LOC107568349,LOC107695201,LOC107695208,LOC107716837,LOC107568268,LOC107568277,LOC107695207 coding upstream 8562 5607481 ~ 5610908 (+)
LOC122323191 v2rx3,LOC107730035,LOC107695206,LOC108434083,LOC108263925 coding upstream 14473 5601441 ~ 5604997 (+)
LOC122323193 LOC107730034,LOC107707879,LOC107557164,LOC107695200,LOC107671059 coding upstream 18409 5597909 ~ 5601061 (+)
LOC122323192 LOC107557164,LOC107707879,LOC107730034,LOC107695200,LOC107671059 coding upstream 31464 5584604 ~ 5588006 (+)
LOC122323002 si:ch211-229c8.4,v2rc1,v2rc2,LOC107742946,LOC107695205,LOC107568358,LOC107732718 coding upstream 47301 5567174 ~ 5572169 (+)
LOC122323190 v2ra17,LOC107695208,LOC107716837,LOC107568277,LOC107695207,LOC107568349,LOC107568268 coding downstream 961 5625938 ~ 5629801 (+)
LOC122363134 v2ra16,LOC107716837,LOC107695208,LOC107568277,LOC107568268,LOC107568349,LOC107695207,LOC107695201 coding downstream 9817 5634794 ~ 5638273 (+)
LOC122363140 v2ra18,LOC107716837,LOC107695208,LOC107568277,LOC107568268,LOC107695207,LOC107568349,LOC107695201 coding downstream 16430 5641407 ~ 5645055 (+)
LOC122323116 v2ra18,LOC107568268,LOC107716837,LOC107695208,LOC107568349,LOC107568277,LOC107695207,LOC107695201 coding downstream 28729 5653706 ~ 5659654 (+)
LOC122323115 v2rh13,LOC107703370,LOC107714341,LOC107568275,LOC107713513,LOC107568276,LOC107703378,LOC107557170 coding downstream 35648 5660625 ~ 5674945 (+)
G124595 NA non-coding upstream 264490 5354713 ~ 5354980 (+)
G124544 NA non-coding upstream 435933 5011405 ~ 5183537 (+)
G124547 NA non-coding upstream 561632 5056750 ~ 5057838 (+)
G124533 NA non-coding upstream 711301 4903768 ~ 4908169 (+)
G124506 NA non-coding upstream 862851 4756230 ~ 4756619 (+)
G124622 v2rx1,LOC107703364,LOC107568274,LOC107716020 non-coding downstream 34929 5659906 ~ 5660233 (+)
G124672 NA non-coding downstream 396264 6021241 ~ 6021636 (+)
G124673 NA non-coding downstream 398682 6023659 ~ 6023991 (+)
G124703 NA non-coding downstream 602504 6227481 ~ 6230584 (+)
LOC122362614 NA non-coding downstream 665545 6290522 ~ 6290901 (+)
LOC122363125 LOC107702192,LOC107742943,LOC107564270,LOC107557162,LOC107702193,LOC107742944,LOC107748627,LOC107671076,LOC107748628,LOC107564269,LOC107702194,LOC107671077,LOC107557163 other upstream 123677 5492237 ~ 5495793 (+)
G124598 NA other upstream 224158 5394895 ~ 5395312 (+)
G124580 NA other upstream 389524 5228563 ~ 5229946 (+)
G124577 NA other upstream 393413 5225808 ~ 5226057 (+)
G124553 NA other upstream 478799 5139490 ~ 5140671 (+)
G124661 NA other downstream 351233 5976210 ~ 5979282 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other downstream 395572 6020549 ~ 6029121 (+)
G124707 NA other downstream 666514 6291491 ~ 6291925 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other downstream 914270 6539247 ~ 6540907 (+)
G124881 LOC102215562 other downstream 1401341 7026318 ~ 7027135 (+)

Expression


Co-expression Network