G125236


Basic Information

Item Value
gene id G125236
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 9694203 ~ 9695683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184883
tatatatatatatatataccaaaggCAAGAAGAGACGCTTAGGTAGGCCTCAACCGAAAAACCCTCCATCAcccccacaaacacacacacacacacacacaccgctgcgCACGTCACGGGGACACGAGTGCGAATGAAAAATATCGACCACTATGAGAATGTGCGCAGATGTGGCTAGCTGCTAAATTTCGTGCTTGAATACGATCTTTTTCATCAAATTAATGGTCGATTGCTATAATGCATAAGTCTGTGACCTACAGTGTACGGCTTgccatttctgtttgtttgaaaaTCAACGATATGGTGAACCGGAGAGTTTGTTAACCGCTGTAAATTCCTGAATTCATAATggggttttttgtttatttatttgtgcattattCGCGCATTCAGCAGTCAAAAGCAAATTCGATTACATTAATAGCGATAATAACAACAGCACTATTGTTgtttgtgttgttattgttgttgttgttattcatCTCTTGTTTCGTTAAGCTCACAAGCTCTCCGAGTTGACTTCtaatttgtcataatttaaCTTGCTCGTTTGTTTCTGTTCTTCTTAACTCGTTAATCCGGACGGCATTGTTCTTGACCCTGAcagatgtatgtgtgttttatcaCTAAGCAGGTCCCTAAGAAACAAGGAAAAGTCTGAAAAAGTTAATCTCCCTCCCTCCCCCGCAGCTGTTAGCTTCAGGAGTCTTGAAGCGTCACCTTTGACATGTCCCCCATGCGCACGAGCGGGGGGCCCCGAGGCTGGGTGGGGGGGGGCCCAGGACTGACCACTGCAAGCTGTCGCCCCACCCGGGCTTGGACGCTTTCGCCGGGGCTCCTAACAGTCCGGTTATCCCGTTCTCTCGCTTGACTGGACATGAAACTGACTCTCGGAGTCGATTTTTAACTATAAACAATGTGAAGTCGCGCAAAGTGATATctcttaatgtgtgtgtgtgtgtgggagggggCGTGGTGGTGGATGCTGTCAACTGCGTTTTTGtcctttcaaaaataaataaatattgttatttttgttattttgtgcaCACATTCGGCACGGACGGGTTACGTGATGGACGCTGATCTGCCTCACGTCTTTTACGCAATTTGCATTCATTGTGTTCGCAGACTGAATTTTGTAATACTGCATTTTGTAAAGTCGGATCGACAGCTTTTTAAAACCAACTGTGcatccaagaaaaaaaacaaatgcattttttgtatattaatggGTTTTGCCTATTCGTTTGTGTTCAGAACGAAGTTCACCCATGAAACGTAATGTGCTGTGTCATTATACTGCCAGGCCTCGGAAGCGGGACACACTCCTGATGGCTTGGTTCGTTACTCCTAATAGCGCAACAATAGAAACATCTGTCCAGCCTTTCTCTGCCTATTACCAACCCGTCTGTCCTTGATCCCCAAAAAACACTACAACTCTGCATGGCACGGGGTGGACTGCATCCAGCAATCTGTAC

Function

GO: NA

KEGG:

id description
ko00910 Nitrogen metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU184883 True 1481 lncRNA 0.44 1 9694203 9695683

Neighbor

gene id symbol gene type direction distance location
iqcg iqcg coding upstream 129956 9555052 ~ 9564247 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding upstream 685154 8999349 ~ 9009049 (+)
LOC122362731 NA coding upstream 888178 8802983 ~ 8806025 (+)
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding upstream 1525979 8143499 ~ 8168224 (+)
emc8 emc8,LOC106587369 coding upstream 1699428 7990533 ~ 7994775 (+)
onecut1 onecut1,LOC107746960,LOC107676486,LOC107712763,LOC107704258 coding downstream 540 9696223 ~ 9702146 (+)
fam214a fam214a,LOC107676484,LOC107704272,LOC107550636,LOC107588549 coding downstream 13521 9709204 ~ 9739406 (+)
arpp19a arpp19a,LOC107704273,LOC107676482,LOC107712699,LOC107550627,LOC107588548,LOC108413875 coding downstream 49221 9744904 ~ 9749783 (+)
LOC122363015 myo5a,myo5aa,LOC107746947,LOC107712751 coding downstream 55574 9751257 ~ 9801571 (+)
LOC122362557 NA coding downstream 452392 10148075 ~ 10160926 (+)
G125194 hipk3,LOC107676485,LOC107588537,LOC107712724 non-coding upstream 181961 9419549 ~ 9512242 (+)
G125191 NA non-coding upstream 342305 9351635 ~ 9351898 (+)
G125067 NA non-coding upstream 967439 8722507 ~ 8726764 (+)
G125065 NA non-coding upstream 1052756 8641229 ~ 8641447 (+)
G125063 NA non-coding upstream 1054249 8638849 ~ 8639954 (+)
G125243 NA non-coding downstream 90577 9786260 ~ 9788103 (+)
G125240 NA non-coding downstream 107236 9802919 ~ 10037928 (+)
G125253 NA non-coding downstream 359129 10054812 ~ 10055057 (+)
G125254 NA non-coding downstream 362058 10057741 ~ 10062780 (+)
LOC122323099 NA non-coding downstream 438288 10133971 ~ 10135088 (+)
G125192 NA other upstream 328715 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1146480 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1157255 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1162131 8168865 ~ 8532072 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 720330 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 936794 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 1129291 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 1272402 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 1530430 11226113 ~ 11233814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012972 NA non-coding NC_007129.7 CM002902.2 38748613 ~ 38754692 (+)
grasscarp (Ctenopharyngodon idella) G149684 NA non-coding CI01000028 null 7639214 ~ 7651417 (-)
rainbow trout (Oncorhynchus mykiss) G550099 NA non-coding NC_048570.1 CM023224.2 79523534 ~ 79523843 (+)