CI01000001_03848621_03850592


Basic Information

Item Value
gene id CI01000001_03848621_03850592
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3848413 ~ 3850798 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03848621_03850592.mRNA
AGCTGCTAGAGCTGCCTCCAGCATAATTGTCATCAAGAAATGAAGTGAATTCATGTTAAAACCAAATGAGTAAAGACAATGGTCACAACTAGACTAGAAGTAATGCATGCACTTTTTATCTAACAGAGGTGGGTAAGAACATCAACCAGGACAAAACTCTTGCTATACAGAGATATGTGGAAGGCTACCATGAACTTGTTAGCCAAATGGCCACCCATCTGGAGAACCATGAACCAGAAGATCATGATGATCATGGGGACCATGAGGAGGTGCTGCAGTACTCTGCAAAACAGGGCAGAGGGTTCACCTGGAAAGATGTGGACTTGGTGGTGAAAAGGCAACCAGTGCCACCTTATCAACACCATCTGCTAGACAGAGCATGGCCTCTACTTTACGGCCTCCTGCTTGGATTTGCCAGCGCACTGCTCATGAGCGTGGCCATCTTGCTTATTAGCATATATGTATCCCATGGCAACAGAACCAAATCCAGGTCTGAGCATCAGCCCTTTTGCTGTCCGCTCCTCAGAGTTGTAACATCATCAGACATACATCATCCAGAGGACACAAGCAGACCGAGTAATGAATGTTCAGGACAATAATGAAGCCATGTTCATCAGTATGAAATTCATTATTAAATGTGCCTTTGATGGCTGATTATTATGACTCAGGCTACTTCTCAAAGTGCCTTCTTATTGGCTGTTATCTCATCTAGTGTGCTATTTAAACTATAGTTAGACAGCCGCACATGCCGACACCTTCGGCGCAGACAGTTCCCACTGCCTCTCATAAAGACGTTTCTGCAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03848621_03850592.mRNA True 807 mRNA 0.44 2 3848413 3850798

Neighbor

gene id symbol gene type direction distance location
CI01000001_03779021_03796563 RAPGEF3 coding downstream 51850 3777809 ~ 3796563 (-)
CI01000001_03623291_03628923 DAZAP2 coding downstream 219490 3623223 ~ 3628923 (-)
CI01000001_03603684_03607612 NA coding downstream 240801 3603346 ~ 3607612 (-)
CI01000001_03534862_03537560 NA coding downstream 310853 3534307 ~ 3537560 (-)
CI01000001_03515448_03525499 CS, CS.L coding downstream 322914 3514972 ~ 3525499 (-)
CI01000001_03853690_03853904 NA coding upstream 2872 3853670 ~ 3853904 (-)
CI01000001_04060101_04062122 NA coding upstream 208712 4059510 ~ 4062793 (-)
CI01000001_04334653_04338081 NA coding upstream 483365 4334163 ~ 4338769 (-)
CI01000001_04343042_04345953 NA coding upstream 492236 4342041 ~ 4346641 (-)
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding upstream 528087 4378885 ~ 4384586 (-)
G15151 NA non-coding downstream 709 3847474 ~ 3847704 (-)
G15097 NA non-coding downstream 12490 3804334 ~ 3835923 (-)
G15099 NA non-coding downstream 110044 3735786 ~ 3738369 (-)
G15113 NA non-coding downstream 146184 3693592 ~ 3702229 (-)
CI01000001_03497808_03500098 RUXG, SNRPGP15, SNRPG.S, SNRPG non-coding downstream 348205 3497483 ~ 3500208 (-)
G15093 NA non-coding upstream 13374 3864172 ~ 3867265 (-)
G15186 NA non-coding upstream 45589 3896387 ~ 3896634 (-)
G15246 NA non-coding upstream 130671 3981469 ~ 3981676 (-)
G15267 NA non-coding upstream 139952 3990750 ~ 3990978 (-)
G15272 NA non-coding upstream 144852 3995650 ~ 3995885 (-)
CI01000001_02258523_02262621 NA other downstream 1551201 2258442 ~ 2263103 (-)
G14228 NA other downstream 1791935 2055974 ~ 2056478 (-)
G14219 NA other downstream 1853515 1994210 ~ 1994898 (-)
G14104 NA other downstream 2080955 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3451280 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 541516 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 625486 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 718284 4725927 ~ 4728210 (-)
G15736 NA other upstream 950103 4800901 ~ 4801395 (-)
G16332 NA other upstream 1099891 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021818 si:ch211-226m16.3 coding NC_007134.7 CM002907.2 33294633 ~ 33309622 (+)