CI01000001_04060101_04062122


Basic Information

Item Value
gene id CI01000001_04060101_04062122
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4059510 ~ 4062793 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04060101_04062122.mRNA
AGCATGCATCCAAAACAGAGAAAAAGAAATGAACAGTCAAAAGTTGAGGAACAAGTGGAACTTCTGTGGAATTCTGCAGTAACTAGCAAGAACTCAAGGAACCTTTGAATTCAATGTGGCTGCTCCAAAGTAAAGATTTCAAACAGAATGCTGAGCATAAGGGAGAACTTCTCAGTCCAGAATACTTTTCCCACTCTGAGTCGCTCCTTCGGTATGACCCTCTGTTCTCATTCTAAGTATGGATACTTCTTGTTTTCAAAGGAGCGTGTCCAATACTCCTGGCACCAGCCAGGCCTTCTGTGAATGTGCTTGCACAAACCAGTGATGATCATGGGTACACAAAGATGGCATGTGTCATATTTTATTTTTAGTTTGGAAGTTGAGAGTTTCATCAACTTTCATCATCACTTTCAGTTTGTTTTGCTCTGTGCTGTGGAAAGTGTTTATCTTCTTGAGTTCCCCTCTCTCTTGTTCCCTGTCTCTCTCCCTCTCTTTTCCGAGGAGCCCTGTTTGCTATCAGGCTCAGGAATGAATTTGGGAGGCTTATCGGAGCTCTTTTCCCAGCTGAGGCGGAGAGGATGTGTTAAGGCGTCTGCCTCCTGACAGGAAAGAGGAGCTATCTCTCCTGATAAGGCTATGGCTGACTTGAGAATTGTAACAAAGCAGACAGCATGGATGCAGGTGGGTACACGTCAGCGTACGTGCATAAGCCCGCAGCCAAAAATCCAAGCCAGGTAAAAAGGAGGTTAAAAGCAATTATATTCCCACAACAAAAGAATTATTTCCACAAGTGCACCGCAGAGAAGCCGGAAAACATAAGACAGATTGAGGCATTGAAGAATGGCTGTCCTATAGAAGTGTGTCATGAAGGCAATTCCATTAACATCTTAATAAAAGCAGCCCGGGCCCAAGAGAGCCTGGAGGCTCTGACTAACGCTTTCAGTCAATGGCTTGGGATGAAAAATTGCTTACACAAAAGCAGCACTATTTCAAATAGTCTAAGGCAAAAATGGTCTCAACAAGCCACTGAGAGCAATACCAGCACTTCAAAGATCAAAGTGCAAAAAGACAGAGCACAAAAAGTGCCTTAGGTTCTCCAAATCCAATTGACTTTTTAGGACTGTTAGGAAAAAAAACAACATTCTTCAAAATATCTTCTTTCGTGCTCCACAGAAGAAACAAAATCATACAGGCTTGGAATGACATGAGGATGAATAAATTATTTTGAGGTGAAAACACCCCATTTGCTTATGAGATGGAGTTTTTCGCCCTACCGTGGTACTTCCACCCACGCATGACCTTTCTAACGTGATTACGTAATGCGTGGCACATCACAGAGCAGTGCAACATGAGCATTTGTGCTTAAAAAGTACATAATTTTTTTTTTCTTTTTTTAGAAAATTCACAATTGTTTCACTAGATAAGACCCTTATTCCTCGGCTGGGATCGTGTAGAGCCGTTTGAAGCCGCAATGAAACTGCAATTTGGACCTCAACCCGTTGGTAGCCGTTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCTTCAAAAACCATACTTTCTTTTCGACTGAAAAAAAGAAAGACATAAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGTAAATTTTAATTCTGAAGTGAACTAATCCTTTAATTAATATGTTGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04060101_04062122.mRNA True 1682 mRNA 0.41 3 4059510 4062793

Neighbor

gene id symbol gene type direction distance location
CI01000001_03853690_03853904 NA coding downstream 205606 3853670 ~ 3853904 (-)
CI01000001_03848621_03850592 NA coding downstream 208712 3848413 ~ 3850798 (-)
CI01000001_03779021_03796563 RAPGEF3 coding downstream 262947 3777809 ~ 3796563 (-)
CI01000001_03623291_03628923 DAZAP2 coding downstream 430587 3623223 ~ 3628923 (-)
CI01000001_03603684_03607612 NA coding downstream 451898 3603346 ~ 3607612 (-)
CI01000001_04334653_04338081 NA coding upstream 271370 4334163 ~ 4338769 (-)
CI01000001_04343042_04345953 NA coding upstream 280241 4342041 ~ 4346641 (-)
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding upstream 316092 4378885 ~ 4384586 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding upstream 332580 4392314 ~ 4399804 (-)
CI01000001_04402985_04419845 NA coding upstream 339987 4402780 ~ 4419877 (-)
G15442 NA non-coding downstream 2929 4042783 ~ 4056581 (-)
G15272 NA non-coding downstream 63625 3995650 ~ 3995885 (-)
G15267 NA non-coding downstream 68532 3990750 ~ 3990978 (-)
G15246 NA non-coding downstream 77834 3981469 ~ 3981676 (-)
G15186 NA non-coding downstream 162876 3896387 ~ 3896634 (-)
G15489 NA non-coding upstream 43361 4106154 ~ 4106669 (-)
G15443 NA non-coding upstream 152725 4215518 ~ 4220189 (-)
G15563 NA non-coding upstream 190191 4252984 ~ 4255024 (-)
G15533 NA non-coding upstream 207339 4270132 ~ 4317068 (-)
G15529 NA non-coding upstream 236775 4299568 ~ 4311601 (-)
CI01000001_02258523_02262621 NA other downstream 1762298 2258442 ~ 2263103 (-)
G14228 NA other downstream 2003032 2055974 ~ 2056478 (-)
G14219 NA other downstream 2064612 1994210 ~ 1994898 (-)
G14104 NA other downstream 2292052 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3662377 361614 ~ 378213 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 413491 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 506289 4725927 ~ 4728210 (-)
G15736 NA other upstream 738108 4800901 ~ 4801395 (-)
G16332 NA other upstream 887896 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G256466 NA non-coding NC_047610.1 CM018556.1 17433566 ~ 17435773 (+)