pef1 (pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637)


Basic Information

Item Value
gene id pef1
gene name pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1281539 ~ 1287206 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU191574
TCGTGAAACAAAAGAGGAGACGATACAGTCTCCAATCACTTCAttgaatggaagaaaaaaattgtgcaaGTGCATcttgattaaatacataattctGTCTACAGTATGTTCTGtattaatattctaaataataaataaaaatcaatataattttaaaaataaagacgtGAGGAcaagtaaatggtgacagaattaaattttttggtaAAGCGCTTTCaactttcaattattttttgtgtggtatatttgcttttgtttatgcCATTTAACCACATCTGCTTCTCTGTTGGTGTTTCAGTGCAGTTCAGCTTTTTAAGTTACTCCTGTCTGTTGCAATCCACACTTTTCATTACTTGTTTTTAAAGGGTTATCCGGGACCGGGCGCTCCCCGACACCACCCGCCTCCAGGGGCACCGTATGGAGGTGGTCCCGCTGTTGGACAGTATGGTTCACCTTATGGTGGTGCCCCTCCAGGTCAACAGTATGGTGGAGGGGCTCCATACGGGTCTTATGGTCAGCCTGGTCCAAGAGGACCGTACGGTGGGGGCCAAGCTCCAGGTGGTCCTTACGGAGGCTATGGACAACCTCAGGGAGGACCGTATAGTCAGCAGGCACCTGCAGGTAACATTCCACCGGTGTGAACCCGAGGCCTACCAGTGGTTTTCATCTGTGGATACAGATCGTAGTGGCTACATTAATGCAAAAGAACTGAAGCAAGCACTCATGAACTCCAACAACTCCTTATTCAATGACGAAACCTGCATGATGATGCTCAaTATGTTTGACAAAACCAAA
>XM_043218225.1
CAAACGTGAAAACGCACCAATCAGCTTCAGGGGGCGggtcttaataaaaacaacagaatcgCTCCATTTGCCGAAGATTCTCCGCGGAATGAGTTATCAATACGGACAGGGTTATCCGGGACCGGGCGCTCCCCGACACCACCCGCCTCCAGGGGCACCGTATGGAGGTGGTCCCGCTGTTGGACAGTATGGTTCACCTTATGGTGGTGCCCCTCCAGGTCAACAGTATGGTGGAGGGGCTCCATACGGGTCTTATGGTCAGCCTGGTCCAAGAGGACCGTACGGTGGGGGCCAAGCTCCAGGTGGTCCTTACGGAGGCTATGGACAACCTCAGGGAGGACCGTATAGTCAGCAGGCACCTGCAGGTAACATTCCACCGTGTGAACCCGAGGCCTACCAGTGGTTTTCATCTGTGGATACAGATCGTAGTGGCTACATTAATGCAAAAGAACTGAAGCAAGCACTCATGAACTCCAACAACTCCTTATTCAATGACGAAACCTGCATGATGATGCTCAaTATGTTTGACAAAACCAAAGCGGGGCGTGTAGATGTATTTGGTTTCTCTGCGCTGTGGATGTTTCTGCAGCAGTGGAGAGCGGTATTCCAACAGTTCGACCGTGACCGATCCGGATCTATTAACAGCAATGAGATGCACCAGGCATTATCTCAGATGGGCTACAATCTGAGTCCTCAGTTCATTCAGGAGCTGGTGAACCGTTACTCAACGGCTCGTGGTGTGAACGGGGTTCTCCAGCTGGATCGCTTCATTCAGGTGTGCACGCAGCTTCAAAGCATGACCCAAGCATTTCGCGAGAAAGACACCGCCATGACCGGCAACGTGAGGATGAATTACGAAGACTTCCTTTCTGGTGCCATCAGCAGACTCATGTGAAGGACTGCATCAGGAATCCAGAAGATGATCTGAGTCTGGATGTACAGCATGACAGTGCCTTTCATTGCAGCTTACCTGATTTGACCATTTATCTGAAAACTATGCTTA

Function

symbol description
pef1 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

NR:

description
LOW QUALITY PROTEIN: peflin

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

RNA

RNA id representative length rna type GC content exon number start site end site
TU191574 False 795 TUCP 0.43 3 1283887 1286640
XM_043218225.1 True 1003 mRNA 0.51 8 1281539 1287206

Neighbor

gene id symbol gene type direction distance location
dlgap3 dlgap3,LOC107664711,LOC107563279,LOC107698989,LOC107712634,LOC107722119 coding downstream 32716 1116971 ~ 1248823 (-)
LOC122323802 LOC107664710 coding downstream 169310 1094990 ~ 1112229 (-)
LOC122323800 thsd7aa,LOC107670038,LOC107722152,LOC107698991,LOC108410784 coding downstream 287891 959443 ~ 993648 (-)
nxph1 nxph1,LOC107670023,LOC107566937,LOC107555956,LOC107712631,LOC107722163,LOC108410782,LOC108272426,LOC107698976 coding downstream 325751 922886 ~ 955788 (-)
phf14 phf14,LOC107722156,LOC107670007,LOC107712766,LOC107698992 coding downstream 470657 737022 ~ 810882 (-)
LOC122323396 NA coding upstream 215089 1502295 ~ 1503733 (-)
LOC122323557 LOC107717726,LOC107700649,LOC107565231,LOC107670692,LOC107563213,LOC107719860 coding upstream 333895 1621101 ~ 1626642 (-)
LOC122323559 LOC107700650,LOC107719859,LOC107563207,LOC107717718,LOC107565241 coding upstream 358362 1645568 ~ 1657024 (-)
LOC122324230 rarb,LOC107700643,LOC107719850,LOC107717720,LOC107563215,LOC107565243,LOC107103632 coding upstream 417790 1704996 ~ 1863997 (-)
nr1d2b nr1d2b,LOC107565234,LOC107700655,LOC107719847,LOC107569910,LOC107743928 coding upstream 683561 1970767 ~ 1978340 (-)
G129717 NA non-coding downstream 9110 1272224 ~ 1272429 (-)
G129714 cx39.4,LOC107563282,LOC107664709,LOC107726142,LOC107712627,LOC107698984,LOC107555947 non-coding downstream 23225 1256545 ~ 1258314 (-)
LOC122324168 NA non-coding downstream 386641 863289 ~ 894898 (-)
G129635 NA non-coding downstream 559228 719320 ~ 722311 (-)
G129618 adgrb2,LOC107722142,LOC107669951,LOC107712761 non-coding downstream 743736 521875 ~ 537803 (-)
G129728 NA non-coding upstream 5425 1292631 ~ 1293279 (-)
G129731 NA non-coding upstream 24980 1312186 ~ 1313269 (-)
G129737 NA non-coding upstream 210856 1498062 ~ 1498636 (-)
G129741 NA non-coding upstream 243714 1530920 ~ 1531330 (-)
G129750 NA non-coding upstream 296865 1584071 ~ 1585419 (-)
smim12 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 1030 1278912 ~ 1280509 (-)
LOC122323272 NA other downstream 186636 1072151 ~ 1094903 (-)
thsd7aa NA other downstream 229415 1017155 ~ 1052124 (-)
G129738 NA other upstream 211482 1498688 ~ 1499406 (-)
LOC122323398 pkib,LOC107098269 other upstream 1452798 2740004 ~ 2751570 (-)
G130000 NA other upstream 1538138 2825344 ~ 2832956 (-)
G130041 LOC107687396,LOC107708727,LOC107595896 other upstream 1621283 2908489 ~ 2911603 (-)
G130083 LOC103461248,LOC102786159 other upstream 1861948 3149154 ~ 3149789 (-)

Expression


Co-expression Network