G138922


Basic Information

Item Value
gene id G138922
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15816920 ~ 16190659 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU205116
CTGCAGTGCTAATGTAATGGATTGTATTTTCTGCTGTCTGACGCATGATCAGTCACATGACACGAACGCCCATGAGCAAAAGGTGATAGCCTTTCAGGTCACATGCTGTACTTCCAGACAGCTGCCACTGATACGAATGcatatagatttttaattttttttactccagGTATCACAGATCTCCGTCCTTGATGCAAATCAGATAATCAGATGTAACGTAACTCAACAAAGTCATCGCGGACATATGCGTTGAATAAAAGGGACATGTAATGTGGCAACACAATTTTTATTGAGTAAGAGATGTCAACACCAGCATGataaaaattgtacaaatttcacaatttcaaaatgaaatatcacTGCAACTTGTGATCTTAAACACTTAGAGCAAAAAAAGTATCATACCAACAGAAATCATGCCATGtggttgaaaaataaaacaagagagaaaaagataGCTAAAGAGCTGGATAGAGGAAGAGAGCAAGAGACATTAAGAAAGCTAtgcttctttctttattttttaatagaaaaatccTGGTTTAAAATGGTTAATTAAAATCCATTTGAAATGGAAACTTGTAACCTGATGATTTcacaattattaataagaaaagTATTCTGCATTCAAGCATGTGACACGATAGATagagttttctatttaaatagtCACAGATAACCTTTTGAAGTAGATAGTACAATATGTGCCAACTGAAAATGAGCAGCGGAATTGTGCTTAAAATCCCTTTTCCTGTCAAATCAGTTATGATAGTGAATGAGAGGATATTGTGTTTTGCTATCAGTGTGTTAAAAGCGTTACCATCTTGGAAATAAGCTGCATACACAAAGCTTCCGGAGAGTGGTTGGGGAAGAGATGTCTGGATATTACAGAACCATAAATAAGAGTGACTAGCACCATTTGCATGAGCTCTTGGAAAAAGTAATGCTAGCCgtaataatacaaaatcatAGATTTCAGAAACAAAGCCCCACGTAGAGCATCAGCAACAAACCAGAGTCATTTCACACTAAGAATCACTGTGACAGTTTTCGACTCATGCTCGATAAATACAAACGACTTTAAAATCCACCACTGAAAATCAGCCCTATTTGTGACTTTGCTTGATGCTTTGAATGGGCTTTGATTAAATGAAGATGAAAGGGGGTCCCCAGACTATAACTGTACATGTCCTTAAGATACTATGGAGTAGTATGAATCGGTCGTGTCAGTAAACCACCCTCTGAACGACCAAAACTGCCCACGCTCTACTGAGATCGAGACCCGTGCCACGCCGTTTCATCGTTTAATTATCAAAAATGCTTCCATTTCCATAATTCTTAGAGCTTAAAGTGCCGCTGATTTCTCAGAAACGTAAAAAATAAGCGATGAAAGTGAATCGCAGGTTACCACAGAAGGCAAGCCGACTTCTCttaatactgtatataactGATTGGAATTCACTAATTGTAATATGATGAGCTTGCATTGCTGATATAGTCGTATTTGTTGTGCACTCGTGACCAGATGAATCTCTACATGATTGTTCGGACAAAATCTACAAGACAAGTGCTCCATTACTATGACACAATGACGTATGGATGGTGACATTAACCCTGTATATCCAGCACACTGATAAACTAACATTCACACACAGATTTACTtccttcaaaagaaaaaagaaaaacaaaacttccCACAATTCAAACGTCTGGGCACCTCCTTGgtctcctggaacaaataaaaacaccaaaacatgGAAACAAAGGTGTCCCTGTGCAAAATCGAACATGagaaatgtgaaattataatGCATTCATCCTTTTGGATTTGATCACCCATGTTTAAACCCTAAAACATGACTGtattaaaagatttatataaaaCTTAATACTTTACATTTAGTAAAAAGATTCATCAGCTTTCTACTATGGTAAGAATAAGAAATTGCATATACCCAAACTTTTGCATCCcatatctaaataaatgattgattcgTTATCATATATTGCTGATATTCTATCATACTAACACTAACATTTTACGatcattaaattaagaattaatgtTGGATTGTCTCCTTGAAATTTTCTGTAGTAATTGGCCTCAACCAGCCGGGCGTTACATTTAGAGAATGgactttgaaaatatttgaaaagttaTGAAATACTTCTTGGGATTTACACCAGTGAGTTTCCGTGTCATGATGTTTGcattcacaatatatatatttttttatgttctatttTTCCATCTATTTCGGGAAttaaaacgagaaaaaaaaagaagaaaagaagaataaacaaacgagcaaaaataaaaacaatacacataCTGCATTAGAGTGCCCACACTGACCACTATAAATATGATTTCGGAACCAAAAGACAAcgtttctcaatatttttacaaaatgtacccAAAATCGAACCACAAAAATGTACCACTGTACACCCATTGAACAGCCTGCACAGCACATTAGTTCCCATTAGTTCCATAAAGAGAAGCTCAGATTGAAGCTGATTGCCCTTACATTCCCTCAATGTATCCCCTCTGCACctctttagatttaaaataatggatggtttttgtttacaattaataaatacatatacactaaAATGTGCATACATTAGCAGCTATAAACAGTACATCACATTATGTCAGGTcatatgaaaaatgtacaaaacatgaATGTTCCTCAAAACATTTGCCATTGGTAGTCGTCATCTTAAAGCAAGGCAACAAATaagttatgtattatttttttttttttgtcaaaagcaTAACAGAATCATAAATAATgccaaataatacaataaattacagCAGCAAAAAAATCATACTAGTTATCCATACTTTTTACATGATgggtttcttttgtttcttaacGCTCTGATCACATGACCCCGTTACTCGGCCAATACCAGCCAATCGCAAAGCTACACTTGGATGCCTTGAACCGCTTGCTTTATGTTCTCCAAGAGGGCCTTGTTCTCCGGGCTCTGGTACTGGTCCTGGTGAGTGTACATATCTGTCAAAGTGCTCACGTAAGTGTCAAAGTTTTGCTCGTTCATCGGCTCCTGTGGAACAGATCGGGATCATTGGAGGTTGGAAAACAAGTCAACAAGCAGAATACGTCCAATCAAACACACAATCAAGGCTTAAGACAGAAAGGGAAGGGGAAAGAGGATATACTTAGGGAGGAATGAACCAACAAAGCTGCCTTTAAAGCTAAATACAAGCTAGGAGGTTTTAGAGAAAATACATCTCTTGAAATGCAGGGCTTGACcaatcacattaaaaatggtcaCTAAGTCAAGCGTAAGACTGTTCTGTATAAATATTCTATATCTGAtggataacaaaaaaattaatgcacatACATTATGTATGCATGCACTGGTGTGAGTTTCATGCTCATGAGTATGTAGGTAATACTGGCATTCACAAGTGATATCAAACAGATTGCCATGAATAGCAGACAGATATCGATGAGCATCACTGTGCCtgataaaataatgtgttttacgATAATAACATGAGTTGactaccaaaaataaatatggctCATATTGCAACCCCAGCTTTCTTAGCGCTATTCCCTGAAGTGGATTATGTCAATATGTGTGGCACTGATACACTCTATGGACCTTCGTGATGCATACACATCGTACTGTGTGTTACAAAGGGGGGAGGACTAGGGGGAGGAAAATGATAGTGAGGAGAAGGATAAAGTTAGACTATGGAAAATGAATCTCTTACTCTGTGGGGCATCTGTAAACAGCAGTAATTTTTAACAGGGGCCTCTTTCAGTGGCATCGGTTTCTACAGAAGGGAGAGGTGTAGAGAAAAGACTATTAGCCTGGCTAAAAGCCAGAGGTCAGTGGTCTCAATAAAACTGACATACTTGACTTTACAACCAAGTTCTGCTTGAGCGGCATGACACATGAACAGGCAACAGTCGTCTGATGTTAGTGCAGCTTGAGGACCCCTCGTGCGCACTCTAAATAGCATCCATCGACAGTGGGGGTGGAGAGTTCAGGAGCCATATTCAAGACGACGTGTTTCAGTTGTTTACTAACATGGCCGCCACATTCGAACAGGGCTTGTCCAATCGTGCCCCGGCTCGATGCGCTTGCGATTCGATCGTGTGGTGGGAGAATCTGATCCACAGCGGCCATGTTGTTACTCAACTGAAAAGCAGTTGTTGGAGTGgaggttgtttttttacaatggTCGGTAAAGGGGAGTGACCTCAGCACAGAAGCATATGGAACTGCGAGGAACTCAACAACAGACATAAAGAAGCAGATGGGAGAAACAATAGAAACCGGAATTTCATCCCTGCTGGAAGGGGATGCAGACTCAGGCCCTGGCTTTCAACAAGAGGCGGTCTACAGCCTAAAAGACTATTCTAAGCACATTAACATGTATTGTACTGTaagagaaatataaatatactttaataactatttcaaatttattcatatttttacgATTGTAAGtaactataaaacatttttatttttattttgactttgacTTTTTGTGCTACTCTCTAAAGccccgttcacaccaagaacgataactataaagacgTTTATTCTAAGCACATGTGCGTCTGCCGCTTTAACTTCTCGAGCTTGTGGTAgtaggatggattctgattggctgtcaatgtttgtatctttcatcagctggaaaataTCGTTCTAGAAGTGATATCGCTTCTCCATGCCTTTATCCTTATAGTTGAAGCTATTGTTTAATACAGAAAGCGAgttttagaactatatctttttatcgttatctttatagttatcatgcttggtgtgaacagcCCTTTATACTCTTAAAAATTAAGGTTCTAAATCTGCATTAacggttccatgaagaacctttgcGTTCCACAAAGAGTTCTTTAAAGcgaaaaaaggttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205116 True 4941 lncRNA 0.37 2 15816920 16190659

Neighbor

gene id symbol gene type direction distance location
sox11b LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258 coding downstream 295137 15519210 ~ 15521783 (-)
rnf144ab rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108 coding downstream 364909 15438737 ~ 15452011 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding downstream 398151 15416967 ~ 15418769 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding downstream 446890 15365958 ~ 15370030 (-)
cpsf3 cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862 coding downstream 467699 15343944 ~ 15349221 (-)
hebp2 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 108615 16299274 ~ 16302044 (-)
kif25 kif25,LOC107726448,LOC107549120,LOC107696106,LOC107732626 coding upstream 111532 16302191 ~ 16310567 (-)
acat2 acat2,LOC107696107,LOC107732634,LOC107549121,LOC107693222,LOC107726488,LOC107601581 coding upstream 120227 16310886 ~ 16314723 (-)
LOC122324754 wtap,LOC107732643,LOC107549122,LOC107693220,LOC107696108,LOC107726473,LOC107601562 coding upstream 124359 16315018 ~ 16321419 (-)
hpcal1 hpcal1,LOC107549126,LOC107696114,LOC107726415,LOC108411356,LOC105909572,LOC107601527,LOC101077504 coding upstream 244562 16435221 ~ 16443831 (-)
LOC122325612 NA non-coding downstream 92690 15724010 ~ 15724230 (-)
LOC122325616 NA non-coding downstream 93637 15723063 ~ 15723283 (-)
LOC122325623 NA non-coding downstream 94151 15722550 ~ 15722769 (-)
LOC122325621 NA non-coding downstream 94655 15722046 ~ 15722265 (-)
G138862 NA non-coding downstream 105867 15684176 ~ 15711053 (-)
G138956 NA non-coding upstream 16411 16207070 ~ 16208001 (-)
G138960 NA non-coding upstream 23685 16214344 ~ 16216716 (-)
G138983 NA non-coding upstream 132747 16323406 ~ 16325753 (-)
G139029 apobb.1,LOC107693214 non-coding upstream 259867 16450526 ~ 16451893 (-)
G139032 NA non-coding upstream 264225 16454884 ~ 16455403 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 801651 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 813718 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 1370995 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1618392 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 2049096 13763335 ~ 13767824 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other upstream 156542 16347201 ~ 16366799 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other upstream 264809 16455468 ~ 16462216 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 1156147 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 1610743 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 2152804 18343463 ~ 18350122 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G467568 NA non-coding CI01000325 null 7596381 ~ 7599813 (-)
rainbow trout (Oncorhynchus mykiss) G223752 NA non-coding NC_048567.1 CM023221.2 10989075 ~ 10989274 (+)
rainbow trout (Oncorhynchus mykiss) G344417 NA non-coding NC_048568.1 CM023222.3 33114504 ~ 33118054 (-)
eurasian perch (Perca fluviatilis) G188719 NA non-coding NC_053129.1 CM020926.1 31351448 ~ 31355505 (+)
mexican tetra (Astyanax mexicanus) G188627 NA non-coding NC_035918.1 CM008321.1 10294475 ~ 10296786 (-)