G188627


Basic Information

Item Value
gene id G188627
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10294475 ~ 10296786 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255734
tgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaatatgttagcaa
>TU255738
tagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaatatgttagcaa
>TU255739
tagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacagcttagcaaccactttagaaatgacagcaacttcctagcaaccacttagtaaccacgtggaatacgttagcaactgcctagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255734 True 493 lncRNA 0.44 2 10295345 10296786
TU255738 False 468 lncRNA 0.44 2 10295345 10296106
TU255739 False 391 lncRNA 0.45 3 10294475 10296106

Neighbor

gene id symbol gene type direction distance location
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 10561 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 191582 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 272798 9999315 ~ 10021677 (-)
LOC103046340 NA coding downstream 298010 9975733 ~ 9996465 (-)
LOC103033950 NA coding downstream 366054 9902960 ~ 9928421 (-)
LOC111195430 gria2,LOC108411138 coding upstream 537230 10834016 ~ 10859898 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding upstream 783337 11080123 ~ 11155745 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 1075471 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 1760746 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 1885333 12182119 ~ 12207582 (-)
G188610 NA non-coding downstream 44162 10243743 ~ 10250313 (-)
G188603 NA non-coding downstream 65333 10228043 ~ 10229142 (-)
G188557 NA non-coding downstream 177733 10115962 ~ 10116742 (-)
G188475 NA non-coding downstream 203749 10090383 ~ 10090726 (-)
G188446 NA non-coding downstream 224765 10068116 ~ 10069710 (-)
G188628 NA non-coding upstream 1822 10298608 ~ 10298852 (-)
G188631 NA non-coding upstream 5580 10302366 ~ 10302680 (-)
G188633 NA non-coding upstream 18555 10315341 ~ 10315572 (-)
G188640 NA non-coding upstream 26696 10323482 ~ 10323683 (-)
G188644 NA non-coding upstream 27735 10324521 ~ 10324998 (-)
LOC111195437 NA other downstream 338158 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2874669 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2903449 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 3101223 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 3311635 6977651 ~ 6982840 (-)
G188898 NA other upstream 694031 10990817 ~ 10991394 (-)
G189055 NA other upstream 1747127 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 1863756 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2001263 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 2315825 12612611 ~ 12714032 (-)

Expression


Co-expression Network