fam19a4 (fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879)


Basic Information

Item Value
gene id fam19a4
gene name fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12057532 ~ 12115859 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682858.1
GCTCAGTCTCTGAGGAGAACAGGTTTGGGTGAGAGATGTCCGTCTGGTCCAGGCCGCGGGACACAGTGTGACGAGACGCCGCTGGGCAGAGAGTGACCGCTGGaatGGGACCATCAGGGAGGGCTGTGTGGCTCCTACGGGTCATCTTCGTTGTTGTCGTGGTGATGTTGTCATGTCGACCGGTGTCAGGAGGAACCCGAACTCTCAGAGGAGGGTCGTATCAGGTGAAGCAGGGGACGTGTGAGGTCGTGGCGATTCACCGCTGCTGTAATAAGAATAAGATTGAGGAACGTTCTCAGACCGTCAAGTGCTCCTGCTTCCCTGGGCAGGTTGCTGGGACGACTCGTGCTCAGCCGTCCTGCGTGGAAGcCTCCATCGTTGTGCAGAAATGGTGGTGCCAGATGCATCCGTGTCTAGATGGCGAGGAATGTAAAGTTCTGCCGGACCTCACCGGCTGGTCCTGCAGCACTGGCAACAAAGTCAAAACCACCAAGgtCACGCGATAGCGAGAAGACGACAGCCCTTTTGCGAGAGACCCAAGGCTCTTCTTTAACGTGGAATTTCTATTCTGGGGGGAGAAAGAGGCCCACTTACAGCTGAGAACTCACGACCGCGGGCAGCGGAGAAGAGAATTAAACACGTGTGATGAATGGACTTACTGGGAATACTGGACATACTGTGTTGTATACTGTAGTCGACGGCGCTGGCCAATGGAAAGACTGGGTGATGGACCAAGTCTGCAACATGTTcctcaatataaatataaatatgaataaatataaaaatatatatacaaaggtCTTCTGGAGCAGATATGGACACTGATCACTGGCGATGACGGTCTGGATTTCTTTAGCTTGATCTACAAAAGTTAACTGTTAACTTATTGGAGTGTATGGTAACATGCGTTGTAAGCAaatgaatgtatgtgtgtgtattattatgAATGTTGGTACATACATGTGGCTGGGAATGTGTGTCGATATGTGTACAtgcatgtatatttgtatatgaaTGCATGTACATAATTGAGATAAACGGGACACGGTGTggtaagtatgtgtgtg

Function

NR:

description
PREDICTED: protein FAM19A4

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682858.1 True 1067 mRNA 0.49 5 12057532 12115859

Neighbor

gene id symbol gene type direction distance location
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 523117 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 901787 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 1197634 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 1773618 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1954639 10094323 ~ 10102893 (-)
tmf1 tmf1 coding upstream 66260 12182119 ~ 12207582 (-)
hmces hmces coding upstream 114557 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 121027 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 142935 12258794 ~ 12289011 (-)
LOC103039006 dnah1 coding upstream 280737 12396596 ~ 12473543 (-)
G189054 NA non-coding downstream 16677 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 18444 12038777 ~ 12039088 (-)
G189052 NA non-coding downstream 48474 12008843 ~ 12009058 (-)
LOC111195377 NA non-coding downstream 300423 11755397 ~ 11757109 (-)
G188994 NA non-coding downstream 597155 11460088 ~ 11460377 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding upstream 105431 12221290 ~ 12229525 (-)
G189159 NA non-coding upstream 211899 12327758 ~ 12328365 (-)
G189315 NA non-coding upstream 400082 12515941 ~ 12518663 (-)
G189316 NA non-coding upstream 412711 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 413285 12529144 ~ 12533333 (-)
G189055 NA other downstream 13239 12043913 ~ 12044293 (-)
G188898 NA other downstream 1066138 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2101215 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4637726 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 4666506 7388397 ~ 7391026 (-)
eogt eogt,LOC107729408 other upstream 44683 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 182190 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 496752 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 499053 12614912 ~ 12619566 (-)
tsen2 NA other upstream 946940 13062799 ~ 13076742 (-)

Expression


Co-expression Network