G189085 (rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505)


Basic Information

Item Value
gene id G189085
gene name rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12221290 ~ 12229525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256279
TTCTGccgatggagtgaccagtgagttgTCGAAAGAGATGGAGATATTGTTGCTACCACATTCCTGTAGCTCACTCACAGGAAGTGGTGTAATCCACTGCGCTACACCAACCACATGACTTATTAATAGGCACAGAACCTTGACCTATTGGCTTAATTAAATTGTACTTTCAAAATGGTCTTACAGTTttaaaaggagaagatagaacCTTGAACTTTTGCTAAAgtagtttaatttttaaaggTCTAGCTTTTAGCTAAGACCTTGTTTACACCTGATCTCTTAGTGTAAATACGGgttatataaaaacatacatttgcACTGCCTTAACATGTGGattaaaccacttcagtttctgaagtgGTTCAAACAAtaggatttgtatctgttttaactgtgttttgggtgtgtttacacttgcatcTTTTTGTGGCGTAGCCTTCCACATATAAATCTGACCACAGATGTAAAATAATACAAGAGGACTTTTCTAGTGCACCAGTGAACTAGTTGAGTTGGTTAACTAACTGCACAGCTGGTTACTGGAATATATAGgctgacatttttttatgtgcaaGGGCTACGTCCACATGTCTGGATATTTTGTTTAGCAAATATTTGCTTTTTCTGTGAccaaaaatagcatttttctATAAACACTAGGCCAAAACACAGGACTTTAAAGGCATTTCTTTTGTATGATTGATTTCTGTATGCagtttattgcttaaataaatcTTCTGAATCCAAACTGTTAATATTGGTTTTATTAACCAAGCCTGTTAATGCAAAACTGCACTATTTATTTGTTGCCATGTTCTTGATGTTCCTTGCCTTAAAAGTGGAATTTTCTCACAAgtgtatttctttaaaaaaaaaaaaaagcaaatgtacAAAACCAGACTTattcaacaattttttttattattttcagtattactttgaaatacatttattttcaaacgATGTATACGCTgtgctgtaataaatgtttcattaatTGTCAAGATGAATGCTTCTGTCCTCCCACCATTGTTGCCTAGTTtcgtatgtatgtgtgtgtgtgtgtttgtatatttgtgtgtatttacttGGGTCAGTTAATGAAAACAatactagtaataataataataataaatcataataatactaataatattgcataaacaaacagtaaaatatCCGAGTGAAAACAAGCTTTTCTTTCCTATCCTGAGCCGCTGGCAAGGAGGGAGCAAGAAAGGGGAAAACAAACAGGCACAAAGTCAGCTTGCGTCACTAATCGGATAATCTGcagaaattacaaattaaaagttCTGACAAAGTGGGTCGACAATTTGAAAGGaggagagcaaaaaaaaaaaaaagaaacactacTGAGTCAGAACTCAGTACACTATAGCTACTATAGTCTACTCAAGGATATTAGAACACACCACACCCACCCGACCCCTGACTGCATATTGAGCATATTGTTGATTGCCTATTTGCTTGGTTAAAGCTTAttgttaattttataaatataggctatatatgtgagtgagtgacttgagtaggggtgggcaatgaGGGCAAGAGTCCAGAACAATTTGCTGATTTATCTGCTCtaaggctgtgttcagactgtcGACCTGAATCAGATCAGGCATTTCtcgattgtatccagattgattttttttatagcctgGACAACCAGAAACCACACTTGAAGGTTGGATTTAAATGCAATTATAATCCTATTTGTACAAATGTATCTCAGTCTGGATGCGCTGGAACATGAATcgaatttaaatgtgttttgtaagCGTCTGTAAGcacagtagggctgcacgatatatcgtttatgATTCATTTAAGCAGGGCGTGCGaggtcacttaaggcaattaaataaaaaacgtcatgttgcaatgtttagATTGTGTTTAGATTCTTGACACaaaaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctccTGCTGCCTAAGAAGTGTTTAAGGGAGTAGCAggagtaaacatgaggtaaTCACATGGTCTCCATCattcacatggttgggcacgtgcttgtaaaagcatgtgttgaaagctgtgcacctcggTCCAACACAGTTTTGCgatgcagatatttccagttacagctgaattcacgcttttaatcttttaattttgCTGTGTTCCCCGGGTTTTAAGAGCTTgatgctgactcagctcttgatttgTCTGGAATTGAGACAGCGCATGGGTGGGGGCGGgtctggtgacgtcatgggccctgcattgttcaatatcgcaatatatattgtcgaaaaaaagaacatttgcaatgtaaaatgttcccaatattgtgcagccctaactcacagcacaacaaacaaaaactcaTCAAATCCAGAGAGCTCGAAATGCGAGGGTTGAAGAAGAGCACTAACAGAACACAGATGTTTGTGAATGTTTGTGATGTCCAGATAATAACAGTGTGGACAGTCTCAACAAATCCAATTTatctgcagtctgaacacaacCAAAGCAGATCTAGTAAACCTGACAATTAACTGAAGAGTTGAATCAGCAGGAAAAGCACAAAACTGTAAAGGAATCTTGCCCTCAAGGACCAAAACTGCCCACCCCTGGATTAGGCTGTTGTCCGAATAGGGTGTTGCTTGAGACTGACTTAGTCAAACACTAGGGGGCAGTGTTGAGTGTtgaaagcagaagcagcacCAATTGTGCTTCAGTGTCAAACAAACGAAGGTTAAAGACTAAAGAGTAAAAACACTGATCTCAGGTCAGTCACCTTTCACACCCAAGAGACTACAGTACGATAATAAAGATTTAATCTCTACCTGACTCCAGATCAGCACCCTCACCAAGTGGGCCTAAATCAGTAAGCACAACTGCGAACCGAGCGAAGTTCTTTCCTGAAGCGAAGGTTTCACATCAATGAAAAGCTAATAAAGCTCATAAACAGCATGCTTGGTTGGCGTCCGCTGAACGTAAAGCCACCCATCGGACTCTTTGAGAAAGAGCAGACAGTTTTGATACCAACACAGAGCTTTTAATACACAGATATATTACACAGCCCCATTGATCGTACAGATTCCAGTTACATGGTGctggaagaggaggaagagaaggaggtGGTGGGTTCATATAAAAAGTCTCAGAAACCATTTCAAGTGCTGTGAGAGGTTCAGAATtaacagtgtatgtgtgtgtgtgcgtgtgcgcgcATATTCGAGAgaagtgtgtgtcagtgtgtgtgtgtggggggtttGTGTGAGCTGAAAGGATACTGGAGGATCCTGTGAAAGGTGTTAGGACTCTGTGAGAAGATTAAAGGTTAAAAGAGCTAATATCGAGGGCCTGGAAACACATGtaccaaagttttttttttgtattattagaaTTCTTTGGGCTTCAGGTATAGAGCCTCTTTGAGCActgatgtgtgtgagtgtgtgagagagaaagagagagtaagtgtgtgcagttcagtttggtgcaTGTTCACATGTGTATGGTTGTgagtgcaattttttttgtatagggTATATTCTAGGAGAGGAAGCCTGCTTGCTCTATGAAGGCCAGTGATTACATTggggaacagagagagagaaagagagagagagagaagagagagaaagaaagagagagagagagagagagagagagagagagagaaagagcgataGAAAGACCAGAAATTTACATAAAGAGGGACTGAGAGGGGTAGGGAAGAAAATCAGGGTGGTAGAGATGAAACAAggccagagaaagagaaaaaagagagaaagagagagagagagagagagagagataaagaggatAGAGGGTGGTCAGCAGCGCCCCTGGAGGTCTTCAGCAGCTGCAGGTCTCTGCTGATGGCTTGGCTCTATCATTTCTGTCCAGCTTGATGGGTTCTGGAAACTCGTTGTACAACTCCACTTCAGTTTCTGTTTCAGTGCATTGCGTGCAATAGTCTGGAAAGCTTGTTCTACGTTGATGGCCTCCTTGGCGCTGGTCTCAAAGTACGGGATGTTGTTCTTGCTCTGGCACCAGGCTTGTGCCCTCTTGGTGGTTACCTGCCGATTCTCTAGGTCGATTTTGTTGCCGAGCACAACGAAGGGGAAGTTCTCAGGGTCACGCGGGCTGGCCTGGATCAAGAACTCGTCCCTCCAGCTGTCCAGTGTCTTAAATGTGTTGGGTGCTGTGACGTCAAAGACTAGCACGCAACAATCTGCACCACGGTAGAATGCCACGCCCAAAGACTGGAAACGCTCTTGACCTGCTGTGTCCCAAATCTGCATTGTGACGAGTCGGTCGTCCACCATCACCTCTTTCGTCAGGAAATCGGCTCCTATTGTGGCTTTGTACTGATTGCTAAACTTTTTGTTCACATACTGGTTCATCAGCGAAGTCTTCCCCACTCTGCGGAGACATGCAGGCACACAGCGTTTCAAACACAAACCACACGGTAAAGAGGAACTGAAAGCTCAGCAGAGCGTCTTCAAACAACAACAGATGccaaactgagctttttaaaaaatagaaatacatgTGAAAGTACTCACAATCGAGTGCTaggacaaaaatatgaacaagaATATAGCAGACAACGAGGGCTGTATGTTA

Function

symbol description
rab7a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-7a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256279 True 4647 lncRNA 0.41 4 12221290 12229525

Neighbor

gene id symbol gene type direction distance location
tmf1 tmf1 coding downstream 13708 12182119 ~ 12207582 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding downstream 105431 12057532 ~ 12115859 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 686875 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 1065545 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 1361392 10834016 ~ 10859898 (-)
hmces hmces coding upstream 891 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 7361 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 29269 12258794 ~ 12289011 (-)
LOC103039006 dnah1 coding upstream 167071 12396596 ~ 12473543 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding upstream 279387 12508912 ~ 12512461 (-)
G189054 NA non-coding downstream 180435 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 182202 12038777 ~ 12039088 (-)
G189052 NA non-coding downstream 212232 12008843 ~ 12009058 (-)
LOC111195377 NA non-coding downstream 464181 11755397 ~ 11757109 (-)
G188994 NA non-coding downstream 760913 11460088 ~ 11460377 (-)
G189159 NA non-coding upstream 98233 12327758 ~ 12328365 (-)
G189315 NA non-coding upstream 286416 12515941 ~ 12518663 (-)
G189316 NA non-coding upstream 299045 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 299619 12529144 ~ 12533333 (-)
G189319 usp48 non-coding upstream 308725 12538250 ~ 12540612 (-)
eogt eogt,LOC107729408 other downstream 42680 12160542 ~ 12178610 (-)
G189055 NA other downstream 176997 12043913 ~ 12044293 (-)
G188898 NA other downstream 1229896 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2264973 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4801484 7409122 ~ 7419806 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 68524 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 383086 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 385387 12614912 ~ 12619566 (-)
tsen2 NA other upstream 833274 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 3089118 15318643 ~ 15322175 (-)

Expression


Co-expression Network