RNA id: TU256279


Basic Information

Item Value
RNA id TU256279
length 4647
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G189085
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12221290 ~ 12229525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGccgatggagtgaccagtgagttgTCGAAAGAGATGGAGATATTGTTGCTACCACATTCCTGTAGCTCACTCACAGGAAGTGGTGTAATCCACTGCGCTACACCAACCACATGACTTATTAATAGGCACAGAACCTTGACCTATTGGCTTAATTAAATTGTACTTTCAAAATGGTCTTACAGTTttaaaaggagaagatagaacCTTGAACTTTTGCTAAAgtagtttaatttttaaaggTCTAGCTTTTAGCTAAGACCTTGTTTACACCTGATCTCTTAGTGTAAATACGGgttatataaaaacatacatttgcACTGCCTTAACATGTGGattaaaccacttcagtttctgaagtgGTTCAAACAAtaggatttgtatctgttttaactgtgttttgggtgtgtttacacttgcatcTTTTTGTGGCGTAGCCTTCCACATATAAATCTGACCACAGATGTAAAATAATACAAGAGGACTTTTCTAGTGCACCAGTGAACTAGTTGAGTTGGTTAACTAACTGCACAGCTGGTTACTGGAATATATAGgctgacatttttttatgtgcaaGGGCTACGTCCACATGTCTGGATATTTTGTTTAGCAAATATTTGCTTTTTCTGTGAccaaaaatagcatttttctATAAACACTAGGCCAAAACACAGGACTTTAAAGGCATTTCTTTTGTATGATTGATTTCTGTATGCagtttattgcttaaataaatcTTCTGAATCCAAACTGTTAATATTGGTTTTATTAACCAAGCCTGTTAATGCAAAACTGCACTATTTATTTGTTGCCATGTTCTTGATGTTCCTTGCCTTAAAAGTGGAATTTTCTCACAAgtgtatttctttaaaaaaaaaaaaaagcaaatgtacAAAACCAGACTTattcaacaattttttttattattttcagtattactttgaaatacatttattttcaaacgATGTATACGCTgtgctgtaataaatgtttcattaatTGTCAAGATGAATGCTTCTGTCCTCCCACCATTGTTGCCTAGTTtcgtatgtatgtgtgtgtgtgtgtttgtatatttgtgtgtatttacttGGGTCAGTTAATGAAAACAatactagtaataataataataataaatcataataatactaataatattgcataaacaaacagtaaaatatCCGAGTGAAAACAAGCTTTTCTTTCCTATCCTGAGCCGCTGGCAAGGAGGGAGCAAGAAAGGGGAAAACAAACAGGCACAAAGTCAGCTTGCGTCACTAATCGGATAATCTGcagaaattacaaattaaaagttCTGACAAAGTGGGTCGACAATTTGAAAGGaggagagcaaaaaaaaaaaaaagaaacactacTGAGTCAGAACTCAGTACACTATAGCTACTATAGTCTACTCAAGGATATTAGAACACACCACACCCACCCGACCCCTGACTGCATATTGAGCATATTGTTGATTGCCTATTTGCTTGGTTAAAGCTTAttgttaattttataaatataggctatatatgtgagtgagtgacttgagtaggggtgggcaatgaGGGCAAGAGTCCAGAACAATTTGCTGATTTATCTGCTCtaaggctgtgttcagactgtcGACCTGAATCAGATCAGGCATTTCtcgattgtatccagattgattttttttatagcctgGACAACCAGAAACCACACTTGAAGGTTGGATTTAAATGCAATTATAATCCTATTTGTACAAATGTATCTCAGTCTGGATGCGCTGGAACATGAATcgaatttaaatgtgttttgtaagCGTCTGTAAGcacagtagggctgcacgatatatcgtttatgATTCATTTAAGCAGGGCGTGCGaggtcacttaaggcaattaaataaaaaacgtcatgttgcaatgtttagATTGTGTTTAGATTCTTGACACaaaaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctccTGCTGCCTAAGAAGTGTTTAAGGGAGTAGCAggagtaaacatgaggtaaTCACATGGTCTCCATCattcacatggttgggcacgtgcttgtaaaagcatgtgttgaaagctgtgcacctcggTCCAACACAGTTTTGCgatgcagatatttccagttacagctgaattcacgcttttaatcttttaattttgCTGTGTTCCCCGGGTTTTAAGAGCTTgatgctgactcagctcttgatttgTCTGGAATTGAGACAGCGCATGGGTGGGGGCGGgtctggtgacgtcatgggccctgcattgttcaatatcgcaatatatattgtcgaaaaaaagaacatttgcaatgtaaaatgttcccaatattgtgcagccctaactcacagcacaacaaacaaaaactcaTCAAATCCAGAGAGCTCGAAATGCGAGGGTTGAAGAAGAGCACTAACAGAACACAGATGTTTGTGAATGTTTGTGATGTCCAGATAATAACAGTGTGGACAGTCTCAACAAATCCAATTTatctgcagtctgaacacaacCAAAGCAGATCTAGTAAACCTGACAATTAACTGAAGAGTTGAATCAGCAGGAAAAGCACAAAACTGTAAAGGAATCTTGCCCTCAAGGACCAAAACTGCCCACCCCTGGATTAGGCTGTTGTCCGAATAGGGTGTTGCTTGAGACTGACTTAGTCAAACACTAGGGGGCAGTGTTGAGTGTtgaaagcagaagcagcacCAATTGTGCTTCAGTGTCAAACAAACGAAGGTTAAAGACTAAAGAGTAAAAACACTGATCTCAGGTCAGTCACCTTTCACACCCAAGAGACTACAGTACGATAATAAAGATTTAATCTCTACCTGACTCCAGATCAGCACCCTCACCAAGTGGGCCTAAATCAGTAAGCACAACTGCGAACCGAGCGAAGTTCTTTCCTGAAGCGAAGGTTTCACATCAATGAAAAGCTAATAAAGCTCATAAACAGCATGCTTGGTTGGCGTCCGCTGAACGTAAAGCCACCCATCGGACTCTTTGAGAAAGAGCAGACAGTTTTGATACCAACACAGAGCTTTTAATACACAGATATATTACACAGCCCCATTGATCGTACAGATTCCAGTTACATGGTGctggaagaggaggaagagaaggaggtGGTGGGTTCATATAAAAAGTCTCAGAAACCATTTCAAGTGCTGTGAGAGGTTCAGAATtaacagtgtatgtgtgtgtgtgcgtgtgcgcgcATATTCGAGAgaagtgtgtgtcagtgtgtgtgtgtggggggtttGTGTGAGCTGAAAGGATACTGGAGGATCCTGTGAAAGGTGTTAGGACTCTGTGAGAAGATTAAAGGTTAAAAGAGCTAATATCGAGGGCCTGGAAACACATGtaccaaagttttttttttgtattattagaaTTCTTTGGGCTTCAGGTATAGAGCCTCTTTGAGCActgatgtgtgtgagtgtgtgagagagaaagagagagtaagtgtgtgcagttcagtttggtgcaTGTTCACATGTGTATGGTTGTgagtgcaattttttttgtatagggTATATTCTAGGAGAGGAAGCCTGCTTGCTCTATGAAGGCCAGTGATTACATTggggaacagagagagagaaagagagagagagagaagagagagaaagaaagagagagagagagagagagagagagagagagagaaagagcgataGAAAGACCAGAAATTTACATAAAGAGGGACTGAGAGGGGTAGGGAAGAAAATCAGGGTGGTAGAGATGAAACAAggccagagaaagagaaaaaagagagaaagagagagagagagagagagagagataaagaggatAGAGGGTGGTCAGCAGCGCCCCTGGAGGTCTTCAGCAGCTGCAGGTCTCTGCTGATGGCTTGGCTCTATCATTTCTGTCCAGCTTGATGGGTTCTGGAAACTCGTTGTACAACTCCACTTCAGTTTCTGTTTCAGTGCATTGCGTGCAATAGTCTGGAAAGCTTGTTCTACGTTGATGGCCTCCTTGGCGCTGGTCTCAAAGTACGGGATGTTGTTCTTGCTCTGGCACCAGGCTTGTGCCCTCTTGGTGGTTACCTGCCGATTCTCTAGGTCGATTTTGTTGCCGAGCACAACGAAGGGGAAGTTCTCAGGGTCACGCGGGCTGGCCTGGATCAAGAACTCGTCCCTCCAGCTGTCCAGTGTCTTAAATGTGTTGGGTGCTGTGACGTCAAAGACTAGCACGCAACAATCTGCACCACGGTAGAATGCCACGCCCAAAGACTGGAAACGCTCTTGACCTGCTGTGTCCCAAATCTGCATTGTGACGAGTCGGTCGTCCACCATCACCTCTTTCGTCAGGAAATCGGCTCCTATTGTGGCTTTGTACTGATTGCTAAACTTTTTGTTCACATACTGGTTCATCAGCGAAGTCTTCCCCACTCTGCGGAGACATGCAGGCACACAGCGTTTCAAACACAAACCACACGGTAAAGAGGAACTGAAAGCTCAGCAGAGCGTCTTCAAACAACAACAGATGccaaactgagctttttaaaaaatagaaatacatgTGAAAGTACTCACAATCGAGTGCTaggacaaaaatatgaacaagaATATAGCAGACAACGAGGGCTGTATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256290 lncRNA downstream 56092 12160542 ~ 12165198 (-) True eogt
TU256228 lncRNA downstream 180435 12040575 ~ 12040855 (-) True G189054
TU256227 lncRNA downstream 182202 12038777 ~ 12039088 (-) True G189053
TU256226 lncRNA downstream 212232 12008843 ~ 12009058 (-) True G189052
XR_002651605.1 lncRNA downstream 464181 11755397 ~ 11757109 (-) True LOC111195377
TU256383 lncRNA upstream 68524 12298049 ~ 12345382 (-) False mapkapk3
TU256388 lncRNA upstream 68524 12298049 ~ 12345382 (-) True mapkapk3
TU256384 lncRNA upstream 68981 12298506 ~ 12345382 (-) False mapkapk3
TU256397 lncRNA upstream 98233 12327758 ~ 12328365 (-) True G189159
TU256601 lncRNA upstream 286416 12515941 ~ 12518663 (-) True G189315
XM_007256427.3 mRNA downstream 13708 12182119 ~ 12207582 (-) True tmf1
XM_022682378.1 mRNA downstream 42680 12163373 ~ 12178610 (-) False eogt
XM_022682858.1 mRNA downstream 105431 12057532 ~ 12115859 (-) True fam19a4
XM_022682374.1 mRNA downstream 686875 11372257 ~ 11534415 (-) True suclg2
XM_022682371.1 mRNA downstream 1065545 11080123 ~ 11155745 (-) True lrig1
XM_007256425.3 mRNA upstream 891 12230416 ~ 12236146 (-) True hmces
XM_022682380.1 mRNA upstream 7361 12236886 ~ 12244320 (-) False tada3
XM_022682379.1 mRNA upstream 7361 12236886 ~ 12244295 (-) False tada3
XM_022682381.1 mRNA upstream 7361 12236886 ~ 12244218 (-) True tada3
XM_007256421.3 mRNA upstream 29269 12258794 ~ 12276558 (-) True LOC103042309
TU256229 other downstream 176997 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1229896 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2266483 9951985 ~ 9954807 (-) False LOC111195437
TU254880 other downstream 4830264 7388397 ~ 7391026 (-) True G187946
TU254657 other downstream 5238450 6978824 ~ 6982840 (-) False LOC111195363
TU256382 other upstream 103020 12332545 ~ 12345382 (-) False mapkapk3
TU256647 other upstream 385387 12614912 ~ 12619566 (-) True G189335
XR_002651608.1 other upstream 833410 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 3089119 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 3202142 15431667 ~ 15457265 (-) False LOC103026676

Expression Profile