LOC111195363 (snrpe)


Basic Information

Item Value
gene id LOC111195363
gene name snrpe
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6977651 ~ 6982840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254656
GGGCCGGTCTCTGTGTGGTTAGTCCTCCTGGTCGCTGCGCGGCGCTGTAGTAAAAATCAGCCCCAGGCAGCTCTCTCTGCGCTTCCCCCCGCCATCGCTGCTACACCAACGTGAGGAGATCGTTCCCCGGCGAGTTTTATTCTCCAGTTATTAcagttataatatttatattacagcagcagctccagcccCGCGGATCAGCAGCATGGCGTACAGAGGACAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCATCAATCTGATTTTCAGGTATCTACAGAATCGATCTCGTATCTCGGTTTGGCTCTATGAGCAGGTCAACATGCGGATAGAAGGCTGCATTATTGGGTTTGATGAGTACATGAACTTGGTTCTGGATGATGCAGAAGAAGTCCACATGAAGACCAAGAACAGAAAGACTCTGGGGAGGATCATGTTGAAAGGAGACAACATCACGCTTCTGCAGAGTGTGTCAAATTAGCCGTTCAGGTTCATCAGGATGaggatatttttgttttcatgtaTGTGATTTTTCCTTTTGGGGGGGATagggatgatttttttttgtgagcatGTTGACTTCttgtaccttagcagtgctcGTGATGAGTGatgttttttctataaaaacaaattaaagactttttttttgtttctttgtacataaggatttttatttaaaattcaaaTATGTTTGTAGGAAAACTTTTAAAACCTTCATGTGGTATTGAgcaccaatcaaaagtttggacactttctcattttatgt
>TU254657
GGGCCGGTCTCTGTGTGGTTAGTCCTCCTGGTCGCTGCGCGGCGCTGTAGTAAAAATCAGCCCCAGGCAGCTCTCTCTGCGCTTCCCCCCGCCATCGCTGCTACACCAACGTGAGGAGATCGTTCCCCGGCGAGTTTTATTCTCCAGTTATTAcagttataatatttatattacagcagcagctccagcccCGCGGATCAGCAGCATGGCGTACAGAGGACAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCATCAATCTGATTTTCAGGTATCTACAGAATCGATCTCGTATCTCGGTTTGGCTCTATGAGCAGGTCAACATGCGGATAGAAGGCTGCATTATTGGGTTTGATGAGTACATGAACTTGGTTCTGGATGATGCAGAAGAAGTCCACATGAAGACCAAGAACAGAAAGACTCTGGGGAGGATCATGTTGAAAGGAGACAACATCACGCTTCTGCAGAGTGTGTCAAATTAGCCGTTCAGGTTCATCAGGATGaggatatttttgttttcatgtaTGTGATTTTTCCTTTTGGGGGGGATagggatgatttttttttgtgagcatGTTGACTTCttgtaccttagcagtgctcGTGATGAGTGatgttttttctataaaaacaaattaaag
>TU254659
GGGCCGGTCTCTGTGTGGTTAGTCCTCCTGGTCGCTGCGCGGCGCTGTAGTAAAAATCAGCCCCAGGCAGCTCTCTCTGCGCTTCCCCCCGCCATCGCTGCTACACCAACGTGAGGAGATCGTTCCCCGGCGAGTTTTATTCTCCAGTTATTAcagttataatatttatattacagcagcagctccagcccCGCGGATCAGCAGCATGGCGTACAGAGGACAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCATCAATCTGATTTTCAGGTATCTACAGAATCGATCTCGTATCTCGGTTTGGCTCTATGAGCAGGTCAACATGCGGATAGAAGGCTGCATTATTGGGTTTGATGAGTACATGAACTTGGTTCTGGATGATGCAGAAGAAGTCCACATGAAGACCAAGAACAGAAAGACTCTGGGGAGGATCATGTTGAAAGGAGACAACATCACGCTTCTGCAGAGTGTGTCAAATTAGCCGTTCAGGTTCATCAGGATGaggatatttttgttttcatgtaTGTGATTTTTCCTTTTGGGGGGGATagggatgatttttttttgtgagcatGTTGACTTCttgtaccttagcagtgctcGTGATGAGTGatgttttttctataaaaacaaattaaagactttttttttgtttctttgtacataaggatttttatttaaaattcaaaTATGTTTGTAGGAAAACTTTTAAAACCTTCATGTGGTATTGAgcaccaatcaaaagtttggacactttctcattttatgttttttttttattgaatttgttttctacattgtagattaatattaaagacacaaaaaaagtaaaggatacatgtggaattatgtagtaaaaaaaaaagtgtaggtcctccacattaatcccctgatctaaacctgatgaactgagatagTGAtatgaggtgatttaattgggaggagctggagcttcacagtgtgaagaaaaAGCCGCAACtactgttcagcacctccaggaactccttcaaggcacagagaaaactattccaagtCACTTTACCTTATGAgataaaataccaagagtgtgcagatctgtcctcaaagataaatgtggtatttaaaataatctaaagtataaaacatattatggtTTAACACTTTGTTTACGAAAAGCTTCAATAATGCTGCATGTgatcctgtatagctttaatatagtcttcaattctaaatttacaattaaacattaaagaaaagaaaacacacagtaTGAGTAGAGGTGGGTCCAAACATTTAAAAGTTATGAATTAGGAATTGTCTAATTGCTAGTTTTTCAGGATGGGAACCTTTGCTTACACATCCATACAGTGATCAGTGATAAGTCTTACAGTGCACAGTATTTGTTTGCTGGACAAacgggggttggacaatgaaactgaaacacctctcattttagtgtgggaggtttcttggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctcaaaatattgcaatgcacacaacattatgggagacatacgaagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgactaagacagcaagtctttgtgatgcatgaagagccacggtatccagggtaatgtcagcgtaccatcaagaaggaccaaccacatccaacaggattaactgtggacgctgttagaggaagctgtctgaaagggatgttcaggtgcaaaccggattgtatccaaaaaa
>TU254662
AGCCCCAGGCAGCTCTCTCTGCGCTTCCCCCCGCCATCGCTGCTACACCAACGTGAGGAGATCGTTCCCCGGCGAGTTTTATTCTCCAGTTATTAcagttataatatttatattacagcagcagctccagcccCGCGGATCAGCAGCATGGCGTACAGAGGACAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCATCAATCTGATTTTCAGGTATCTACAGAATCGATCTCGTATCTCGGTTTGGCTCTATGAGCAGGTCAACATGCGGATAGAAGGCTGCATTATTGGGTTTGATGAGTACATGAACTTGGTTCTGGATGATGCAGAAGAAGTCCACATGAAGACCAAGAACAGAAAGACTCTGGGGAGGATCATGTTGAAAGGAGACAACATCACGCTTCTGCAGAGTGTGTCAAATTAGCCGTTCAGGTTCATCAGGATGaggatatttttgttttcatgtaTGTGATTTTTCCTTTTGGGGGGGATagggatgatttttttttgtgagcatGTTGACTTCttgtaccttagcagtgctcGTGATGAGTGatgttttttctataaaaacaaattaaagactttttttttgtttctttgtacataaggatttttatttaaaattcaaaTATGTTTGTAGGAAAACTTTTAAAACCTTCATGTGGTATTGAgcaccaatcaaaagtttggacactttctcattttatgt
>XM_022682319.1
AAAAATCAGCCCCAGGCAGCTCTCTCTGCGCTTCCCCCCGCCATCGCTGCTACACCAACGTGAGGAGATCGTTCCCCGGCGAGTTTTATTCTCCAGTTATTAcagttataatatttatattacagcagcagctccagcccCGCGGATCAGCAGCATGGCGTACAGAGGACAGGGCCAGAAGGTGCAGAAGGTGATGGTGCAGCCCATCAATCTGATTTTCAGGTATCTACAGAATCGATCTCGTATCTCGGTTTGGCTCTATGAGCAGGTCAACATGCGGATAGAAGGCTGCATTATTGGGTTTGATGAGTACATGAACTTGGTTCTGGATGATGCAGAAGAAGTCCACATGAAGACCAAGAACAGAAAGACTCTGGGGAGGATCATGTTGAAAGGAGACAACATCACGCTTCTGCAGAGTGTGTCAAATTAGCCGTTCAGGTTCATCAGGATGaggatatttttgttttcatgtaTGTGATTTTTCCTTTTGGGGGGGATagggatgatttttttttgtgagcatGTTGACTTCttgtaccttagcagtgctcGTGATGAGTGatgttttttctataaaaacaaattaaagactttttttt

Function

symbol description
snrpe Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including U2-type spliceosomal complex; methylosome; and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).

NR:

description
small nuclear ribonucleoprotein E

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254656 False 772 TUCP 0.43 5 6978695 6982840
TU254657 False 643 TUCP 0.47 5 6978824 6982840
TU254659 True 1816 TUCP 0.40 5 6977651 6982840
TU254662 False 714 TUCP 0.42 5 6978695 6982782
XM_022682319.1 False 602 mRNA 0.45 5 6978814 6982789

Neighbor

gene id symbol gene type direction distance location
sox13 sox13 coding downstream 28697 6897991 ~ 6948954 (-)
LOC103022878 NA coding downstream 148940 6812408 ~ 6828711 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding downstream 475255 6395390 ~ 6502396 (-)
LOC103042703 LOC103042703,LOC108437606 coding downstream 598887 6339628 ~ 6378764 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding downstream 900937 5917506 ~ 6076714 (-)
kif17 kif17,LOC108438632 coding upstream 24607 7007447 ~ 7031027 (-)
sh2d5 sh2d5 coding upstream 50264 7033104 ~ 7050301 (-)
hp1bp3 hp1bp3 coding upstream 70386 7053226 ~ 7066086 (-)
LOC103037403 NA coding upstream 214360 7197200 ~ 7205391 (-)
LOC103036072 phactr3,LOC108254891 coding upstream 246633 7229473 ~ 7343221 (-)
G187787 NA non-coding downstream 91554 6885187 ~ 6886097 (-)
G187766 NA non-coding downstream 176203 6775168 ~ 6801448 (-)
G187764 NA non-coding downstream 217749 6759507 ~ 6759902 (-)
G187763 NA non-coding downstream 219049 6758142 ~ 6758602 (-)
G187745 NA non-coding downstream 421774 6555315 ~ 6555877 (-)
G187794 NA non-coding upstream 8124 6990964 ~ 6997859 (-)
LOC111195364 NA non-coding upstream 123360 7106200 ~ 7130779 (-)
G187875 NA non-coding upstream 170243 7153083 ~ 7155349 (-)
G187878 NA non-coding upstream 200986 7183826 ~ 7184053 (-)
G187880 NA non-coding upstream 204950 7187790 ~ 7188038 (-)
svbp svbp other downstream 1454730 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1471904 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 1988393 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 2816697 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 3197931 3778014 ~ 3779720 (-)
pdrg1 pdrg1 other upstream 205776 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 405557 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 426282 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2968244 9951084 ~ 9956317 (-)
G188898 NA other upstream 4007977 10990817 ~ 10991394 (-)

Expression


Co-expression Network