LOC107197677


Basic Information

Item Value
gene id LOC107197677
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3778014 ~ 3779720 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253783
CTTAGCATCATCTCAGCATCTTCTCAGCATCTTCTGAGCATCAACCAAGAGCACTCAAGGCCTGCAGCATTAACTTTTGCTCAAGAGCAACACAAATctgctttatttcattttgaaatCAAGAGAAAACTTCACCTCAGCATCAAACATGCCTGCCTACACCCTGGACATCGCTCCTCAGGACAACATCCAGTTCGCCAGGTGTAAACTCCACAGTTTGGAGAGGAAATGCTTCAGCAAAGTGGAGAAACTGAAGCTGACCCTTGAAGAACACCTGCAAAATGGAATCCCTGCTTCAGATCTTCTGGAGAAGACAGTTTCCTTCTTCGCCATGAAGAAGGCGGTGGTGTTCCCCGGCGGATACTCGAGGTGTACCCGGGACGTTCTCCGAATGTGCCCCTCCCCGACAGAAGACGTGGAGCCGTTGTTTTGTCAggagtgaggtggagagagatgAGGTTGATGAGGATGAGGTTTGGGACGAGCTTTTAATAAGACTTTTGAAAAGAACTACCTCAGATTTTCCTCTGAACTTCCTCTGAACTGTTTTGAATGGCACCTTGCTGGCACTTTTTTTACTACAGACATTTCTAGACAAGAACCGAGAGCTGGAACTGGATGGAAATATGGTccacatacagtatgtacatGTACTTGTACAGTCTTGTGGACACGCTGCAGTATACCTGAGGATGCGCTTTATGCATtcgttttataatgttttataataatagaaattatttgtttttcctcTCATTGAGAGAAGCTTTTAATTGAGATATTGTATagaaatgatgatgatgatgatgatgaaccACGTCGATGAGCAGGATGTCTGCTGGAGGACATGATAGCTCACTGTAAAAGCATGTTAAATTAACCTTTAAAGATACAATGTATCATTTGAATAGACTcgattttgttgatttttgttttgaatCAGATGAAAATAAGTTTAATGTGTGACGCATGCATTTCTTTTTatgaaataaattttatttcacaTGTATTCACATGATGTGTTGGTCTATAAT
>XR_001518702.2
GCCGGATTAGGAGACTTCAGCCAGATCTGAACTGAGCCCAGCAGGAGAGGAGCCAGAAGAACCAGACTTAGCATCATCTCAGCATCTTCTCAGCATCTTCTGAGCATCAACCAAGAGCACTCAAGGCCTGCAGCATTAACTTTTGCTCAAGAGCAACACAAATctgctttatttcattttgaaatCAAGAGAAAACTTCACCTCAGCATCAAACATGCCTGCCTACACCCTGGACATCGCTCCTCAGGACAACATCCAGTTCGCCAGGTGTAAACTCCACAGTTTGGAGAGGAAATGCTTCAGCAAAGTGGAGAAACTGAAGCTGACCCTTGAAGAACACCTGCAAAATGGAATCCCTGCTTCAGATCTTCTGGAGAAGACAGTTTCCTTCTTCGCCATGAAGAAGGCGGTGGTGTTCCCCGGCGGATACTCGAGGTGTACCCGGGACGTTCTCCGAATGTGCCCCTCCCCGACAGAAGACGTGGAGCCGTTGTTTTGTCAggagtgaggtggagagagatgAGGTTGATGAGGATGAGGTTTGGGACGAGCTTTTAATAAGACTTTTGAAAAGAACTACCTCAGATTTTCCTCTGAACTTCCTCTGAACTGTTTTGAATGGCACCTTGCTGGCACTTTTTTTACTACAGACATTTCTAGACAAGAACCGAGAGCTGGAACTGGATGGAAATATGGTccacatacagtatgtacatGTACTTGTACAGTCTTGTGGACACGCTGCAGTATACCTGAGGATGCGCTTTATGCATtcgttttataatgttttataataatagaaattatttgtttttcctcTCATTGAGAGAAGCTTTTAATTGAGATATTGTATagaaatgatgatgatgatgatgatgaaccACGTCGATGAGCAGGATGTCTGCTGGAGGACATGATAGCTCACTGTAAAAGCATGTTAAATTAACCTTTAAAGATACAATGTATCATTTGAATAGACTcgattttgttgatttttgttttgaatCAGATGAAAATAAGTTTAATGTGTGACGCATGCATTTCTTTTTatgaaataaattttatttcacaTGTATTCACA

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253783 False 1034 TUCP 0.41 2 3778014 3779654
XR_001518702.2 True 1081 lncRNA 0.42 2 3778033 3779720

Neighbor

gene id symbol gene type direction distance location
LOC111195356 NA coding downstream 23348 3753585 ~ 3754666 (-)
LOC111195352 NA coding downstream 34001 3742952 ~ 3744013 (-)
dnase1l3 dnase1l3 coding downstream 71668 3699756 ~ 3706346 (-)
dennd6a dennd6a,LOC107657973,LOC107680547 coding downstream 304925 3447309 ~ 3473089 (-)
LOC103029097 arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973 coding downstream 348327 3422321 ~ 3429687 (-)
LOC103033529 LOC108431592,LOC108431591 coding upstream 15432 3795152 ~ 3796296 (-)
aldh4a1 aldh4a1,LOC106582961 coding upstream 29569 3809289 ~ 3821888 (-)
LOC103032581 iffo2,LOC108254735 coding upstream 51208 3830928 ~ 3877313 (-)
LOC111195357 LOC107706545 coding upstream 112801 3892521 ~ 3902031 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding upstream 122672 3902392 ~ 3907278 (-)
G187152 NA non-coding downstream 42081 3732364 ~ 3735933 (-)
G187143 NA non-coding downstream 47890 3721944 ~ 3730124 (-)
G187144 abhd6,abhd6a,LOC107657977,LOC107557412,LOC107701976 non-coding downstream 61460 3708912 ~ 3716554 (-)
G187127 NA non-coding downstream 78658 3698293 ~ 3699356 (-)
G187132 NA non-coding downstream 115830 3661430 ~ 3662184 (-)
G187166 NA non-coding upstream 100169 3879889 ~ 3882633 (-)
G187167 NA non-coding upstream 103137 3882857 ~ 3883115 (-)
G187168 NA non-coding upstream 105184 3884904 ~ 3887048 (-)
G187172 NA non-coding upstream 162776 3942496 ~ 4028558 (-)
G187177 NA non-coding upstream 212252 3991972 ~ 4031442 (-)
G187154 NA other downstream 3171 3765863 ~ 3774843 (-)
G187156 NA other downstream 22337 3749815 ~ 3755677 (-)
G186673 NA other downstream 2387527 1389924 ~ 1390487 (-)
tma7 NA other downstream 3196476 487081 ~ 581538 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other upstream 191214 3970934 ~ 4160954 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 1194508 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1713692 5493412 ~ 5505747 (-)
svbp svbp other upstream 1739073 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 3197931 6977651 ~ 6982840 (-)

Expression


Co-expression Network