LOC103029097 (arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973)


Basic Information

Item Value
gene id LOC103029097
gene name arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3422321 ~ 3429687 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682235.1
CACTCAGTGAAGTGGCTAGTGATGTGGCACGTGTGACGTAAGCCGGCAGCAAAGTAAGAGTGTGACGTGGAGCAGAAACGGAGAGGGACTGAAGTGCTGCTGCTGGTTGTGCTGGTCTGCTGGTTTTCTGGATTAAACTGAGCTCTGAGAGTGTTTCTCTGAGGGAAGGAGAGCGTGTGCACCGTGGTTTGATTCTGTAGACGCGGCTAATTCTGCTCCCGGTTCCGCTGGTTCTGATTAAACAGCCTGTGAGCTGCTGGATGGTGgatctgtgagctgctgttaGCCGCCTGCTGCGACCTGCTCCTCCTCCACCCAGAACTCCACAAATACAGCCCAGAAACTCCAGCTAAACCCCGCTGTTCACCAGATTAACCAGGGCCAGGATGGGGCTCACCATTTCCAGCGTGTTTTCTCGGCTTTTCGggaaaaaacagatgagaattCTGATGGTTGGCCTTGACGCTGCTGGAAAGACCACCATCCTGTACAAACTTAAACTCGGAGAAATAGTCACAACTATCCCCACCATAGgctTTAATGTTGAGACTGTCGAGTACAAGAACATTTCTTTCACTGTGTGGGATGTGGGTGGCCAGGATAAGATCAGACCTCTTTGGAGGCACTACTTCCAAAACACACAGGGTCTCATCTTTGTTGTAGACAGTAATGATCGTGAGCGTGCACAGGAAGCTGCTGAGGAGCTGCAGAAGATGCTTCAAGAAGATGAGCTCCGAGATGCGGTTCTGCTTGTTTTCGCAAACAAACAAGACTTGCCCAATGCCATGCCTATCAGCGAGATGACCGACAAACTGGGTCTGCAGGCGCTCAGGAGCAGAACTTGGTATGTTCAGGCGACCTGTGCCACTCAGGGAACAGGTCTGTATGAAGGACTGGACTGGCTTTCTGAGCAGCTCTCCAAACGCTAAACAGCAGAGTCTCTATGATCCAACAAAGGACATTATCAACAAAACTGACAGAGAAATGGGACATATTGCCGTATACTTGAGCTGATGGTTACCAAATCTGCCACTGAGGCAATTTTGACAGtgcatttctttcatttttttttttttgttttaaatgttttgcattgGTCTGACTGACTTAAATTTCCTCAATCATTTATACAGGGCATGATTTAGCGTGCCTGTTTTAATTTGATCCAAATTAAAGCTTCaaaagttttgtttgtttgcttgaaGAGGAATATTTGGCGTAAAAGGTACAGATACATATAAAATGATAGGCTTTATTATCTATCGTCAAGCTCTTCATTTAGTCAAACTTGGgatcatatttatatttgtacaaACACTTGCTTTTGCTTTCGTcattccatttatttttatgtattcgTCTCAGTATAACAGTagcttttgcataactttttTCTGGgctgagtctttttttttttttttttttaaggattttagaCTAAATTTAAGACAAAGCACAAAGTAATAGAACCTTTGGCTCTgcttagacacacacactcagcagcaTTGTTctaatcagatttatttttattgttgggGACAGTTATGTGTGCAGTTGAGGTCCTGCCCATGTTGTGCCtgtttacaactttacaaacaGTGCAGTGAAAAAGTCAATATAGCTGATGGGTAGACTCTGTAGTGGTATGACTTCatctaataataatctgttGTGTTACAGTTGCGCTGCatttagggctgcacaatactgTTTCTGctatatatattagaatattaaacaatattttctaaaattaa

Function

symbol description
arf4a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in blood. Orthologous to human ARF4 (ADP ribosylation factor 4).

NR:

description
PREDICTED: ADP-ribosylation factor 5-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682235.1 True 1757 mRNA 0.43 6 3422321 3429687

Neighbor

gene id symbol gene type direction distance location
rps23 rps23,rs23,LOC106566095 coding downstream 27412 3392394 ~ 3394909 (-)
asb14 asb14,LOC108280995 coding downstream 37552 3374959 ~ 3384769 (-)
appl1 appl1 coding downstream 48289 3357105 ~ 3374032 (-)
hesx1 hesx1 coding downstream 70064 3348144 ~ 3352257 (-)
il17rd il17rd,LOC105418442 coding downstream 82802 3279359 ~ 3339519 (-)
dennd6a dennd6a,LOC107657973,LOC107680547 coding upstream 17622 3447309 ~ 3473089 (-)
dnase1l3 dnase1l3 coding upstream 270069 3699756 ~ 3706346 (-)
LOC111195352 NA coding upstream 313265 3742952 ~ 3744013 (-)
LOC111195356 NA coding upstream 323898 3753585 ~ 3754666 (-)
LOC103033529 LOC108431592,LOC108431591 coding upstream 365465 3795152 ~ 3796296 (-)
G187000 NA non-coding downstream 6675 3411244 ~ 3415646 (-)
G186992 NA non-coding downstream 113048 3305354 ~ 3309273 (-)
G186952 NA non-coding downstream 159503 3262445 ~ 3262818 (-)
G186951 NA non-coding downstream 195206 3226839 ~ 3227115 (-)
G186950 NA non-coding downstream 204763 3217297 ~ 3217558 (-)
G187101 slmap non-coding upstream 88062 3517749 ~ 3519339 (-)
G187117 flnb non-coding upstream 201527 3631214 ~ 3635476 (-)
G187132 NA non-coding upstream 231743 3661430 ~ 3662184 (-)
G187127 NA non-coding upstream 268606 3698293 ~ 3699356 (-)
G187144 abhd6,abhd6a,LOC107657977,LOC107557412,LOC107701976 non-coding upstream 279225 3708912 ~ 3716554 (-)
G186673 NA other downstream 2031834 1389924 ~ 1390487 (-)
tma7 NA other downstream 2840783 487081 ~ 581538 (-)
LOC103045965 NA other downstream 2881532 539042 ~ 540789 (-)
G186495 smarcd1,LOC107698569 other downstream 2890319 475441 ~ 532002 (-)
G187156 NA other upstream 320128 3749815 ~ 3755677 (-)
G187154 NA other upstream 336176 3765863 ~ 3774843 (-)
LOC107197677 NA other upstream 348327 3778014 ~ 3779720 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other upstream 541247 3970934 ~ 4160954 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 1544541 4974228 ~ 4989258 (-)

Expression


Co-expression Network