dnase1l3 (dnase1l3)


Basic Information

Item Value
gene id dnase1l3
gene name dnase1l3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3699756 ~ 3706346 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682252.1
AAACGGCTGGAGTCTTATCATTCAGCCCAGCCTGGCCTGCAGTGATGAAGCTCGCTCTGTTTCTCCTGCTGGGTGTTGGAGGAGCCTACAGCCTCAAAATCTGCTCCTTCAACATCCAGTCCTTCGGAGAGAGCAAACTCTCCAAACCCACCGTCCTCAACATCATACTGGAGAGTATTACTAGATGTGACCTCATGCTGGTCATGGAAATCAAAGACGTGAAGGGTGAGGCCTTCCCCCAGCTGATGACTTACCTCAACAGCAGGTACAGAGGCAGGAAGCCGGAGTATAGCTATGTGATCAGTGAGAGACTGGGTCGGAAGTCCTATAAGGAGCAGTACGCCTTTATCTACAGGCAGCGCTCCGTCTCTGTGAAAGCTGTGTATCAGTATCCCGACACACAGTCAGAAGATGTCGACGCTTTCGCCCGGGAGCCTTTCGCTGTGTGGTTTTCATCTCCAACAACAGAGATCAAAGATCTGGTCATCATCCCCATCCACACAGCTCCAGAAGCAGCAGTTAAAGAGATAGATGAGCTGTATGATGTCTACCACAACGTCTCTCAGCACTGGCAATCACAGCAGAACTTCATCATCATGGGGGACTTCAACGCCGCCTGCGGTTACGTCCCCAAGAGAGAGTGGAGGAACATCCGCCTGCGCTTGGACTCAGAGTTCCTCTGGCTGACTAATGATAAGCTGGACACTTCAGTTAAACACTCCACCAACTGCGCTTACGATAGGGTGGTGCTTCGTGGAGAGAAGATGATCCAGGCTGTCAGTGCAGACTCAGTGGAAGTGTATGATTTTAAACAGGCGTTTGGACTCACAGAGACAGAGGCTCTGGCTGTGAGTGATCATTTCCCTCTTTGCTTTACTGTAAATGCAGCTCGGAGGAGCGGTTAAGACCGTCGAGAGGTTTCTGCACTTCCATGCTTCTTCTGACAAGatccttaacccttgtgtggtgttcgggtctgtgggacccgttttcatttttcatcaaatgatacaaaaacaataatttt
>XM_022682253.1
ACGGCTGGAGTCTTATCATTCAGCCCAGCCTGGCCTGCAGTGATGAAGCTCGCTCTGTTTCTCCTGCTGGGTGTTGGAGGAGCCTACAGCCTCAAAATCTGCTCCTTCAACATCCAGTCCTTCGGAGAGAGCAAACTCTCCAAACCCACCGTCCTCAACATCATACTGGAGAGTATTACTAGATGTGACCTCATGCTGGTCATGGAAATCAAAGACGTGAAGGGTGAGGCCTTCCCCCAGCTGATGACTTACCTCAACAGCAGGTACAGAGGCAGGAAGCCGGAGTATAGCTATGTGATCAGTGAGAGACTGGGTCGGAAGTCCTATAAGGAGCAGTACGCCTTTATCTACAGGCAGCGCTCCGTCTCTGTGAAAGCTGTGTATCAGTATCCCGACACACAGTCAGAAGATGTCGACGCTTTCGCCCGGGAGCCTTTCGCTGTGTGGTTTTCATCTCCAACAACAGAGATCAAAGATCTGGTCATCATCCCCATCCACACAGCTCCAGAAGCAGCAGTTAAAGAGATAGATGAGCTGTATGATGTCTACCACAACGTCTCTCAGCACTGGCAATCACAGAACTTCATCATCATGGGGGACTTCAACGCCGCCTGCGGTTACGTCCCCAAGAGAGAGTGGAGGAACATCCGCCTGCGCTTGGACTCAGAGTTCCTCTGGCTGACTAATGATAAGCTGGACACTTCAGTTAAACACTCCACCAACTGCGCTTACGATAGGGTGGTGCTTCGTGGAGAGAAGATGATCCAGGCTGTCAGTGCAGACTCAGTGGAAGTGTATGATTTTAAACAGGCGTTTGGACTCACAGAGACAGAGGCTCTGGCTGTGAGTGATCATTTCCCTCTTTGCTTTACTGTAAATGCAGCTCGGAGGAGCGGTTAAGACCGTCGAGAGGTTTCTGCACTTCCATGCTTCTTCTGACAAGatccttaacccttgtgtggtgttcgggtctgtgggacccgttttcatttttcatcaaatgatacaaaaacaataatttt

Function

symbol description
dnase1l3 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Involved in apoptotic DNA fragmentation. Located in endoplasmic reticulum and nucleus.

NR:

description
PREDICTED: deoxyribonuclease gamma

GO: NA

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682252.1 True 1027 mRNA 0.50 8 3699756 3706346
XM_022682253.1 False 1022 mRNA 0.50 8 3699756 3706344

Neighbor

gene id symbol gene type direction distance location
dennd6a dennd6a,LOC107657973,LOC107680547 coding downstream 226667 3447309 ~ 3473089 (-)
LOC103029097 arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973 coding downstream 270069 3422321 ~ 3429687 (-)
rps23 rps23,rs23,LOC106566095 coding downstream 304847 3392394 ~ 3394909 (-)
asb14 asb14,LOC108280995 coding downstream 314987 3374959 ~ 3384769 (-)
appl1 appl1 coding downstream 325724 3357105 ~ 3374032 (-)
LOC111195352 NA coding upstream 36606 3742952 ~ 3744013 (-)
LOC111195356 NA coding upstream 47239 3753585 ~ 3754666 (-)
LOC103033529 LOC108431592,LOC108431591 coding upstream 88806 3795152 ~ 3796296 (-)
aldh4a1 aldh4a1,LOC106582961 coding upstream 102943 3809289 ~ 3821888 (-)
LOC103032581 iffo2,LOC108254735 coding upstream 124582 3830928 ~ 3877313 (-)
G187127 NA non-coding downstream 400 3698293 ~ 3699356 (-)
G187132 NA non-coding downstream 37572 3661430 ~ 3662184 (-)
G187117 flnb non-coding downstream 64280 3631214 ~ 3635476 (-)
G187101 slmap non-coding downstream 180417 3517749 ~ 3519339 (-)
G187000 NA non-coding downstream 284110 3411244 ~ 3415646 (-)
G187144 abhd6,abhd6a,LOC107657977,LOC107557412,LOC107701976 non-coding upstream 2566 3708912 ~ 3716554 (-)
G187143 NA non-coding upstream 15598 3721944 ~ 3730124 (-)
G187152 NA non-coding upstream 26018 3732364 ~ 3735933 (-)
G187155 NA non-coding upstream 51023 3757369 ~ 3784341 (-)
G187166 NA non-coding upstream 173543 3879889 ~ 3882633 (-)
G186673 NA other downstream 2309269 1389924 ~ 1390487 (-)
tma7 NA other downstream 3118218 487081 ~ 581538 (-)
LOC103045965 NA other downstream 3158967 539042 ~ 540789 (-)
G186495 smarcd1,LOC107698569 other downstream 3167754 475441 ~ 532002 (-)
G187156 NA other upstream 43469 3749815 ~ 3755677 (-)
G187154 NA other upstream 59517 3765863 ~ 3774843 (-)
LOC107197677 NA other upstream 71668 3778014 ~ 3779720 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other upstream 264588 3970934 ~ 4160954 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 1267882 4974228 ~ 4989258 (-)

Expression


Co-expression Network