vamp3 (vamp3,LOC107582408,LOC107751179)


Basic Information

Item Value
gene id vamp3
gene name vamp3,LOC107582408,LOC107751179
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4974228 ~ 4989258 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254169
AGTGTGCTGTGAGACAGTAGTCCACACAGACTGACTGATAGACAGAGCTGCAGCTACTGATCACTACGGAGTTTATACAGCAGCCGGCCCTCTACCGAACACCACATCAACAACCATGTCTGCAGAGGGTCCAGGAGCCTCGGGAGCGGCGGGCGGCAACCGCAGGTTGCAGCAGACCCAGGCTCAAGTAGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAGGTGTTGGAGCGAGACTCAAAGCTCTCCGAGTTGGACGACAGGGCAGATGCTCTTCAGGCCGGAGCCTCTCAATTTGAGACCAATGCTGCCAAGCTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCCATTCTGATAGCTGTGATCttaatcatcattatcatcattatcaTTTGGAGTACCTCCTAAAACAGCCAGAAAACGGGGAAGAAGGAATGGCATGACGGTTGTGACGAAGTGCGAGAAGTATCAGCTGATACTCTGAAAAGACAGACGGCGTGTTCTTCCCAAACTCTAAAGCTGTTCTAGCCTGCTGACGTTTGAAAGCATATTTTGTAAAGTATCCTcaactcttgttttttttatgttttggttTTAATGATCCTGAATTAATTGCTGCCTCACAGGGCAAGACAAACGCTTAAAACTTAACACATCACTCATTTTCTTGttatttaaccctttactaAAACTAGTTTTCCACTACACtcccttctcctcctcttcccagTCACGCATGCTGCACTGCCCTGGCCTGAAACTTTAATGCTTAAGAAAATAAGATCTCAAAGTAGGTCTTTCCTCAGTTTGATAAGGCTAATGTGGAGCCTACAGAAGTATAAGAATGGTTAGATGTGGCGTAGCAGTTGAAAAATACTGACCAAAAAGTGGAGGAACGTGTGCCAAGCATTTGACGACTAGTTATGTAAAAAGTTTGCTTTAAaaccgtggagtcgtcttcagttatatagtttatagtgcCTTACAGTTTTATTGCCAGCACAGTTTAGAACCATTCAGCCATTTGAAGGCCTTATTAGAACAAAACACACTCAAGTGCCATTAAAACCGAGCAGTGCCTTAGAGAGTTACATAGACACTGCCAGTATAATTCTCCCAGCTCCAATCTGATGGAGAGTTGCATTCAAATTACACTTCATgcctgcatgttttttttttcttaattattgcattaaaataaaggttttttttatttgtgccaCACGTTTTACAATAATTCATAAAACGACAAAgttgaaaaaaatctattgcttgctttgtttatttgctgtgtGTTGTAGTAATCCATATATCTGCTTTGCTTTAGCATTTGTTATTTTACTGATATCTCCATACAGCAAACCAGCTGTATGCTGGTTTTCTCCATTGTCTGATGCCATACCTCTTTCTCACAGCGCCAAAACAAgaagtgtgtttatttgtgtgtgtgtgtgtgtgtgtgtgtggtatgacACAGTATATATGTGATGTGATATATGTGCCTTCTTTGGATTGTATGTAAATTGTAAACAAATTGTACACAGTTCTATAAGGTGGCCTTCCAAACTGATATGCTTATTGGATTTGCCATTATTGcattaataaatatgaatttaacAACCTATGAA
>TU254170
AGTGTGCTGTGAGACAGTAGTCCACACAGACTGACTGATAGACAGAGCTGCAGCTACTGATCACTACGGAGTTTATACAGCAGCCGGCCCTCTACCGAACACCACATCAACAACCATGTCTGCAGAGGGTCCAGGAGCCTCGGGAGCGGCGGGCGGCAACCGCAGGTTGCAGCAGACCCAGGCTCAAGTAGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAGGTGTTGGAGCGAGACTCAAAGCTCTCCGAGTTGGACGACAGGGCAGATGCTCTTCAGGCCGGAGCCTCTCAATTTGAGACCAATGCTGCCAAGCTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCCATTCTGATAGCTGTGATCttaatcatcattatcatcattatcaTTTGGAGTACCTCCTAAAACAGCCAGAAAACGGGGAAGAAGGAATGGCATGACGGTTGTGACGAAGTGCGAGAAGTATCAGCTGATACTCTGAAAAGACAGACGGCGTGTTCTTCCCAAACTCTAAAGCTGTTCTAGCCTGCTGACGTTTGAAAGCATATTTTGTAAAGTATCCTcaactcttgttttttttatgttttggttTTAATGATCCTGAATTAATTGCTGCCTCACAGGGCAAGACAAACGCTTAAAACTTAACACATCACTCATTTTCTTGttatttaaccctttactaAAACTAGTTTTCCACTACACtcccttctcctcctcttcccagTCACGCATGCTGCACTGCCCTGGCCTGAAACTTTAATGCTTAAGAAAATAAGATCTCAAAGTAGGTCTTTCCTCAGTTTGATAAGGCTAATGTGGAGCCTACAGAAGTATAAGAATGGTTAGATGTGGCGTAGCAGTTGAAAAATACTGACCAAAAAGTGGAGGAACGTGTGCCAAGCATTTGACGACTAGTTATGTAAAAAGTTTGCTTTAAaaccgtggagtcgtcttcagttatatagtttatagtgcCTTACAGTTTTATTGCCAGCACAGTTTAGAACCATTCAGCCATTTGAAGGCCTTATTAGAACAAAACACACTCAAGTGCCATTAAAACCGAGCAGTGCCTTAGAGAGTTACATAGACACTGCCAGTATAATTCTCCCAGCTCCAATCTGATGGAGAGTTGCATTCAAATTACACTTCATgcctgcatgttttttttttcttaattattgcattaaaataaaggttttttttatttgtgccaCACGTTTTACAATAATTCATAAAACGACAAAgttgaaaaaaatctattgcttgctttgtttatttgctgtgtGTTGTAGTAATCCATATATCTGCTTTGCTTTAGCATTTGTTATTTTACTGATATCTCCATACAGCAAACCAGCTGTATGCTGGTTTTCTCCATTGTCTGATGCCATACCTCTTTCTCACAGCGCCAAAACAAgaagtgtgtttatttgtgtgtgtgtgtgtgtgtgtgtgtggtatgacACAGTATATATGTGATGTGATATATGTGCCTTCTTTGGATTGTATGTAAATTGTAAACAAATTGTACACAGTTCTATAAGGTGGCCTTCCAAACTGATATGCTTATTGGATTTGCCATTATTGcattaataaatatgaatttaacAACCTA
>XM_007251424.3
TGCTGTGAGACAGTAGTCCACACAGACTGACTGATAGACAGAGCTGCAGCTACTGATCACTACGGAGTTTATACAGCAGCCGGCCCTCTACCGAACACCACATCAACAACCATGTCTGCAGAGGGTCCAGGAGCCTCGGGAGCGGCGGGCGGCAACCGCAGGTTGCAGCAGACCCAGGCTCAAGTAGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAGGTGTTGGAGCGAGACTCAAAGCTCTCCGAGTTGGACGACAGGGCAGATGCTCTTCAGGCCGGAGCCTCTCAATTTGAGACCAATGCTGCCAAGCTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCCATTCTGATAGCTGTGATCttaatcatcattatcatcattatcaTTTGGAGTACCTCCTAAAACAGCCAGAAAACGGGGAAGAAGGAATGGCATGACGGTTGTGACGAAGTGCGAGAAGTATCAGCTGATACTCTGAAAAGACAGACGGCGTGTTCTTCCCAAACTCTAAAGCTGTTCTAGCCTGCTGACGTTTGAAAGCATATTTTGTAAAGTATCCTcaactcttgttttttttatgttttggttTTAATGATCCTGAATTAATTGCTGCCTCACAGGGCAAGACAAACGCTTAAAACTTAACACATCACTCATTTTCTTGttatttaaccctttactaAAACTAGTTTTCCACTACACtcccttctcctcctcttcccagTCACGCATGCTGCACTGCCCTGGCCTGAAACTTTAATGCTTAAGAAAATAAGATCTCAAAGTAGGTCTTTCCTCAGTTTGATAAGGCTAATGTGGAGCCTACAGAAGTATAAGAATGGTTAGATGTGGCGTAGCAGTTGAAAAATACTGACCAAAAAGTGGAGGAACGTGTGCCAAGCATTTGACGACTAGTTATGTAAAAAGTTTGCTTTAAaaccgtggagtcgtcttcagttatatagtttatagtgcCTTACAGTTTTATTGCCAGCACAGTTTAGAACCATTCAGCCATTTGAAGGCCTTATTAGAACAAAACACACTCAAGTGCCATTAAAACCGAGCAGTGCCTTAGAGAGTTACATAGACACTGCCAGTATAATTCTCCCAGCTCCAATCTGATGGAGAGTTGCATTCAAATTACACTTCATgcctgcatgttttttttttcttaattattgcattaaaataaaggttttttttatttgtgccaCACGTTTTACAATAATTCATAAAACGACAAAgttgaaaaaaatctattgcttgctttgtttatttgctgtgtGTTGTAGTAATCCATATATCTGCTTTGCTTTAGCATTTGTTATTTTACTGATATCTCCATACAGCAAACCAGCTGTATGCTGGTTTTCTCCATTGTCTGATGCCATACCTCTTTCTCACAGCGCCAAAACAAgaagtgtgtttatttgtgtgtgtgtgtgtgtgtgtgtgtggtatgacACAGTATATATGTGATGTGATATATGTGCCTTCTTTGGATTGTATGTAAATTGTAAACAAATTGTACACAGTTCTATAAGGTGGCCTTCCAAACTGATATGCTTATTGGATTTGCCATTATTGcattaataaatatgaatttaacAACCTATGAA

Function

symbol description
vamp3 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP3 (vesicle associated membrane protein 3).

NR:

description
vesicle-associated membrane protein 3

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254169 True 1644 lncRNA 0.41 5 4974228 4989258
TU254170 False 1640 lncRNA 0.41 5 4974232 4989258
XM_007251424.3 False 1640 mRNA 0.41 5 4974228 4989254

Neighbor

gene id symbol gene type direction distance location
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 1382 4946572 ~ 4972846 (-)
LOC103024768 LOC108441423 coding downstream 39624 4900015 ~ 4934604 (-)
LOC103024243 NA coding downstream 116919 4843232 ~ 4857309 (-)
LOC103025299 NA coding downstream 150153 4810683 ~ 4824075 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding downstream 362498 4584260 ~ 4611730 (-)
LOC103022065 NA coding upstream 5739 4994997 ~ 5466875 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 757632 5746890 ~ 5763512 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding upstream 782552 5771810 ~ 5776145 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 928248 5917506 ~ 6076714 (-)
LOC103042703 LOC103042703,LOC108437606 coding upstream 1350370 6339628 ~ 6378764 (-)
G187432 NA non-coding downstream 103408 4869891 ~ 4870820 (-)
G187431 NA non-coding downstream 104440 4868925 ~ 4869788 (-)
G187375 NA non-coding downstream 172327 4801108 ~ 4801901 (-)
G187365 NA non-coding downstream 255560 4715615 ~ 4718668 (-)
G187353 NA non-coding downstream 341763 4627926 ~ 4632465 (-)
G187545 NA non-coding upstream 502123 5491381 ~ 5492666 (-)
LOC111195361 NA non-coding upstream 511737 5500995 ~ 5501769 (-)
G187548 NA non-coding upstream 519027 5508285 ~ 5509731 (-)
G187555 NA non-coding upstream 711614 5700872 ~ 5706342 (-)
G187569 p3h1,LOC107756620 non-coding upstream 792900 5782158 ~ 5783592 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 813274 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 1194508 3778014 ~ 3779720 (-)
G187154 NA other downstream 1199385 3765863 ~ 3774843 (-)
G187156 NA other downstream 1218551 3749815 ~ 3755677 (-)
G186673 NA other downstream 3583741 1389924 ~ 1390487 (-)
phf13 phf13 other upstream 504154 5493412 ~ 5505747 (-)
svbp svbp other upstream 529535 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 1988393 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2199358 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 2399139 7388397 ~ 7391026 (-)

Expression


Co-expression Network