LOC103024768 (LOC108441423)


Basic Information

Item Value
gene id LOC103024768
gene name LOC108441423
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4900015 ~ 4934604 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682287.1
ctctctctctgttcactcCGTCTGTacacatgtatgtgtgtgttattagtgAGCTGATGGGAGTGAGCTGTATTGGGAGTGTGCTGTAGTGAACCCGGTTCGGTTCGGGCTGAGGCGGATCTGTGGTACCGGTACCGGTGCGGTGAGGATGAGCGAGTAACCCAACAAAACAAGCCTCAGCTGCAGGAACAGAACAAAGACACGAAGATATACAGGCAGAGCACAGCCATGACTGAGATCGAGACTGAGATTGATAAATCCCACCTGCCACGGGTCTATGATGtgtgtcagtgtttctCAGTGCTGGAGGATGGAGCGCTCGCTCAGAGCCTTCAGGAGCAGGAGATCGAGCAGTTCTACAGCTCTAACGTGCAGAAGAACCAGGCGGTGCAGAGTGATGTTCGTCTAGCCCGAcggctgcaggaggaggaggagcagaggGTTCATCAAAGCCACCAGATTCAGCAAATGGAGGAACAGGACTGTGAGTACGCAAAGATGATTCAGGAGGAGCTCAGAAGACGCGACGAAGAAGCTCGgaggagagaagaagaggaTGAGGAACTGGCCAAGCgtctgcaggaggaggaggagctggagatgAAGCAGCAGAGAGCAGAGGCCGGTCAGCCTGCGGACACCACACACTCCCCACTCAGTGAAGAGCTGTGGGCGCAGTTGGTGCGGGATACTGAGCTGGCCCGTACTCtacaggaggaggaagatgggCAGCCTGACAGGAAGAGCCGGGGATCAGACGTGGATTTCCGTGCTGCTCAAGTGGCGCAGGATGAGGAGATTGCCCGCTACATGCAGCGACAGGAGCGAAAGAACAGCAGGAGCAGGAGGTCACAGGACCTAGAGGTCCAGGAGAGGTCACTTGAGGTCATTCGGAAAGACGCTGACAACACGACCAGCAGAAAAATGGAGCCTCTGCAAATGCCGAGGGAGAGGCTGAACTCTGAGGGTCTTCACTCACCTGTGGAAGAGGAACACACACTCGAGCAGCATCACCTAAGCCCTACCTGCAATACTCTGCGAACACAGCCAGTCCGTAACATCGCAGAGGAGCTGGACCCAACTTTCACCaccagaaagagagacagccaGATATCCACCAGCCCACCACCAGGAATATGCCTGGCACCACGGACCCCTCACAGTATTTTCTATGATTACCTGCCTGAACCCACATTCGTCCCGCCCACCAGACGCCATGTTGACAAATTGGTGCGGCCCAAAGCCAAAGAGAAACGAGAGAACTGCAAGCAACAGTAACTGGAATATTTAGAAGGTGGATTTATGCTTCTGCGTCAGAACAACAACAACGAAGAGTCTACGACATAGCCTGCGCAAGTGGTTTACGCCATTTTTTAATGCGCCACGATACTGGTGCATTGGTGTGTCTAAACACTAGTTGAGAATGAAGACTCTGTGCCACTgcgtttttaatcttttttttggtGTACATCAGTTTCTGCAatgaaaaatctgagaaaaccGTGAATGATATGGTCTGTGTAGCCACTGAACCAGTTCAGTTCATTCAACTGGATTTAAAGGTGTATTCACACTAGGCAATCCATGCGTTTCCGGGCTTGGTTACCTTCCAAAGCATGTGCACATGCACAGTACACTGAACAGTGCCCTGGCCTGCTTGAAGAGTGATACAGTGTGAGCACTATCTGTGCACTAGAagtgcatatcgtcgctgtccaatgaaaaacacttatctccaaaacagcaactttacaggagagggaaaaaaccttg
>XM_022682288.1
ctctctctctgttcactcCGTCTGTacacatgtatgtgtgtgttattagtgAGCTGATGGGAGTGAGCTGTATTGGGAGTGTGCTGTAGTGAACCCGGTTCGGTTCGGGCTGAGGCGGATCTGTGGTACCGGTACCGGTGCGGTGAGGATGAGCGAGTAACCCAACAAAACAAGCCTCAGCTGCAGGAACAGAACAAAGACACGAAGATATACAGGCAGAGCACAGCCATGACTGAGATCGAGACTGAGATTGATAAATCCCACCTGCCACGGGTCTATGATGTCGAGCAGTTCTACAGCTCTAACGTGCAGAAGAACCAGGCGGTGCAGAGTGATGTTCGTCTAGCCCGAcggctgcaggaggaggaggagcagaggGTTCATCAAAGCCACCAGATTCAGCAAATGGAGGAACAGGACTGTGAGTACGCAAAGATGATTCAGGAGGAGCTCAGAAGACGCGACGAAGAAGCTCGgaggagagaagaagaggaTGAGGAACTGGCCAAGCgtctgcaggaggaggaggagctggagatgAAGCAGCAGAGAGCAGAGGCCGGTCAGCCTGCGGACACCACACACTCCCCACTCAGTGAAGAGCTGTGGGCGCAGTTGGTGCGGGATACTGAGCTGGCCCGTACTCtacaggaggaggaagatgggCAGCCTGACAGGAAGAGCCGGGGATCAGACGTGGATTTCCGTGCTGCTCAAGTGGCGCAGGATGAGGAGATTGCCCGCTACATGCAGCGACAGGAGCGAAAGAACAGCAGGAGCAGGAGGTCACAGGACCTAGAGGTCCAGGAGAGGTCACTTGAGGTCATTCGGAAAGACGCTGACAACACGACCAGCAGAAAAATGGAGCCTCTGCAAATGCCGAGGGAGAGGCTGAACTCTGAGGGTCTTCACTCACCTGTGGAAGAGGAACACACACTCGAGCAGCATCACCTAAGCCCTACCTGCAATACTCTGCGAACACAGCCAGTCCGTAACATCGCAGAGGAGCTGGACCCAACTTTCACCaccagaaagagagacagccaGATATCCACCAGCCCACCACCAGGAATATGCCTGGCACCACGGACCCCTCACAGTATTTTCTATGATTACCTGCCTGAACCCACATTCGTCCCGCCCACCAGACGCCATGTTGACAAATTGGTGCGGCCCAAAGCCAAAGAGAAACGAGAGAACTGCAAGCAACAGTAACTGGAATATTTAGAAGGTGGATTTATGCTTCTGCGTCAGAACAACAACAACGAAGAGTCTACGACATAGCCTGCGCAAGTGGTTTACGCCATTTTTTAATGCGCCACGATACTGGTGCATTGGTGTGTCTAAACACTAGTTGAGAATGAAGACTCTGTGCCACTgcgtttttaatcttttttttggtGTACATCAGTTTCTGCAatgaaaaatctgagaaaaccGTGAATGATATGGTCTGTGTAGCCACTGAACCAGTTCAGTTCATTCAACTGGATTTAAAGGTGTATTCACACTAGGCAATCCATGCGTTTCCGGGCTTGGTTACCTTCCAAAGCATGTGCACATGCACAGTACACTGAACAGTGCCCTGGCCTGCTTGAAGAGTGATACAGTGTGAGCACTATCTGTGCACTAGAagtgcatatcgtcgctgtccaatgaaaaacacttatctccaaaacagcaactttacaggagagggaaaaaaccttg

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 50-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682287.1 True 1773 mRNA 0.52 12 4900015 4934604
XM_022682288.1 False 1710 mRNA 0.51 11 4900015 4934604

Neighbor

gene id symbol gene type direction distance location
LOC103024243 NA coding downstream 42706 4843232 ~ 4857309 (-)
LOC103025299 NA coding downstream 75940 4810683 ~ 4824075 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding downstream 288285 4584260 ~ 4611730 (-)
slc45a1 slc45a1,LOC107654425 coding downstream 340216 4538302 ~ 4559799 (-)
errfi1 LOC108413607 coding downstream 515777 4374402 ~ 4384238 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding upstream 11968 4946572 ~ 4972846 (-)
LOC103022065 NA coding upstream 60393 4994997 ~ 5466875 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 812286 5746890 ~ 5763512 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding upstream 837206 5771810 ~ 5776145 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 982902 5917506 ~ 6076714 (-)
G187432 NA non-coding downstream 29195 4869891 ~ 4870820 (-)
G187431 NA non-coding downstream 30227 4868925 ~ 4869788 (-)
G187375 NA non-coding downstream 98114 4801108 ~ 4801901 (-)
G187365 NA non-coding downstream 181347 4715615 ~ 4718668 (-)
G187353 NA non-coding downstream 267550 4627926 ~ 4632465 (-)
G187545 NA non-coding upstream 556777 5491381 ~ 5492666 (-)
LOC111195361 NA non-coding upstream 566391 5500995 ~ 5501769 (-)
G187548 NA non-coding upstream 573681 5508285 ~ 5509731 (-)
G187555 NA non-coding upstream 766268 5700872 ~ 5706342 (-)
G187569 p3h1,LOC107756620 non-coding upstream 847554 5782158 ~ 5783592 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 739061 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 1120295 3778014 ~ 3779720 (-)
G187154 NA other downstream 1125172 3765863 ~ 3774843 (-)
G187156 NA other downstream 1144338 3749815 ~ 3755677 (-)
G186673 NA other downstream 3509528 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 39624 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 558808 5493412 ~ 5505747 (-)
svbp svbp other upstream 584189 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2043047 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2254012 7188616 ~ 7193252 (-)

Expression


Co-expression Network