LOC103032581 (iffo2,LOC108254735)


Basic Information

Item Value
gene id LOC103032581
gene name iffo2,LOC108254735
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3830928 ~ 3877313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606413.2
TGCTGGATATAAACCAAGAAACCGGGCTGCTGAatttctgctgctgctactgctgaaGGAGCACGCGGTGAGAGGAGCTGGAGGTGACAGCTCGGGGAGGATGAAGTCGAGCTGACCCGCTCTTGAGACGCGAATTAACTAACTGGATGGACTGAATAATTACAAACTGGTTAAAAACTGCTGAAACATGCTGAAAAGATAGGAAAATACGCATAGTGATGGTGGAGTCACTCGCCGTCACTGTTCCGCTTGAGTTTGGAGGTTTATTTGATGTTTTAGACGTGGGCAGACGTTAAAAACAGTAGGTTTGGACTGTTCGGATAGCTAACTAGCGCTAGCTCTATCATACAGATAGAGCGGCTGGCTCCAGTACCGCAGCAGCCGCACCGCAGCGCTACACACAGTGGCTCAACCCAGGATGAGCTCGCTGCTATTCGGCGACGGTCTGCCCCCGGCCGCCGCGATGCTCACGACCCTCCCGGGAGGTATCGGTGGTATCGGAGGGTCCGGAGCGCCCGCAGCCGCCCTGAGGAACGACCTGGGCTCCAACATCCACGTCCTGAAGACGCTGAACCTGCGCTTCCGCTGCTTCCTCGCCAAAGTCCACGAGTTGGAGCGGCGGAACAAGCTGCTGGAGAGCCAGCTGCAGCAAGCCGCCGAGCGGGCCAGGTACCACAGCCTGTTCGCGCGGGACGTCGCGGTGCAGACCGACTCCCCGCAGGAGCCGCGGCTGCCCGGCACGATCTGGAGCTACACGCACGTGTGGAGGTCCGGGGAGCGGGTGGAGACCCTGCACGGGCCCGGGGTGTCCTGGACCCATCCGGACGGGGTCGGGGTGCAGATCGATACCATCACTCCGGAGCTCCGAGCCCTGTACAACGTGCTGGCCaaggtgaagagagagagggacgagTACAAGAGAAAATGGGAGGAGGAGCTGTCCAGACGAGAGCAGGTGGAGTCTGTGGTGGAATCGCTACAGGAGAGTGCCCAGGAGTCAGAGGCCATTCAAGAAGAGATGAAAAACAAAGTGGAGAGGTTAAAGGCCGAGCTAGTCGTCTATAAAAGCCTGATGAGTGACCAAATGTCTGAGCTGGACTCCAAGATCCAGGAAAAAGCCATGAAAGTAGATATGGACATCTGCAGGAGAATCGACATCACGGCCAAGCTCTGTGATGTAGCACAGCAGAGGAACTCAGAGGACATGTCCTTAATGTTCAACGTCAGTCCGTCCAGAGCTCCAGTGGGGGCTGTGGCCTGCAGGAGGAAGGAGAGGAAGGCTGTGTCAGACGAGGAAAGCTCAGAGATGGATGCAGATACCAGCACATCAGAGGAGGAAGTGCCTGGATCTCTCAACATTACAGACGAGATGAAGAGGATGCTCAATCACCTGAGGGAGACTTTTGACATTGACGACGATTGCGACAGCTTGACGTGGGAAGAAAACGAAGAGACACTGCTGCTATGGGAAGACTTCACCAACTACAACGTGCCCTTTGCAATCAACAGCACAGCCAACGGTCCAGACGGTGGCGGAAACAGCCAGGAAGCTGCTTCGCAGGATGGCAGTCTGGGCAGCCTCATCGATGAGACTGAGACTCTCTTCAAGACCAGAGAGCAGGAGTACCAGGCAACTATCGGCCAGATTGAGATGGAGCTGGCCACAGCTAAGAGTGACATGAACAGACACCTGCATGAGTACATGGAGATGTGCAGTATGAAGAGGGGGCTGGACGTGCAGATGGAGACTTGCAGAAGAATGATCAAGGGGGGCAGGAATTCTCCGTCCTTCAGCTCAGTAGCAAGCAGTGACTCAGGGAACACTGATGAGATTCAGGACGAGTCGGACAAGGATGGAGACACAGACAGTCCAATCAGCTGATACCGGCCGAGCCTGGCCCCGCCCCTCCACCCTTGCTGAGCGCCAATCAGCAGCTCCAAGGCCTCTCAGCATTCGGCCGACGATAATGAGCAGTATCAATCCAAAGGAACTCTGATGGACAGGGTCCCATTTCATTCTGAAAATACTATAGGTGCTTTAAAAGAATGGGAGGGGGAGGTGAAGAGGCTGGTCGCTTTGCTCTGTGAgcggtttttaaaaaaaaagtctcaccCAGCGTCTCGACAGTGCTCTCTTCCTCCGTCTGCTGGGGCTCCACACTGACCTCAAAGGGCAACCATAGGGCAATCAGACCTAAGTAACCAATCACAAGCATCGTTCACAGCACTGTCAAAGTAGAAAAGCCAAAAATATACCAAGCCTAGATCACTGTTTTGTACCATCAGTATATCTGtagcaaaaaaaactaaataaaacacagcatTATAGAGGGATGCCATAGAGATACGTTTGTCTGAAAAGTG

Function

symbol description
iffo2 Predicted to be located in intermediate filament.

NR:

description
PREDICTED: intermediate filament family orphan 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606413.2 True 2364 mRNA 0.54 10 3830928 3877313

Neighbor

gene id symbol gene type direction distance location
aldh4a1 aldh4a1,LOC106582961 coding downstream 9040 3809289 ~ 3821888 (-)
LOC103033529 LOC108431592,LOC108431591 coding downstream 34632 3795152 ~ 3796296 (-)
LOC111195356 NA coding downstream 76262 3753585 ~ 3754666 (-)
LOC111195352 NA coding downstream 86915 3742952 ~ 3744013 (-)
dnase1l3 dnase1l3 coding downstream 124582 3699756 ~ 3706346 (-)
LOC111195357 LOC107706545 coding upstream 15208 3892521 ~ 3902031 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding upstream 25079 3902392 ~ 3907278 (-)
LOC107196799 LOC108431625,LOC107706545 coding upstream 31058 3908371 ~ 3916776 (-)
park7 park7,LOC107657982,LOC107701995 coding upstream 285077 4162390 ~ 4171827 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding upstream 351527 4228840 ~ 4303455 (-)
G187155 NA non-coding downstream 46587 3757369 ~ 3784341 (-)
G187152 NA non-coding downstream 94995 3732364 ~ 3735933 (-)
G187143 NA non-coding downstream 100804 3721944 ~ 3730124 (-)
G187144 abhd6,abhd6a,LOC107657977,LOC107557412,LOC107701976 non-coding downstream 114374 3708912 ~ 3716554 (-)
G187127 NA non-coding downstream 131572 3698293 ~ 3699356 (-)
G187166 NA non-coding upstream 2576 3879889 ~ 3882633 (-)
G187167 NA non-coding upstream 5544 3882857 ~ 3883115 (-)
G187168 NA non-coding upstream 7591 3884904 ~ 3887048 (-)
G187172 NA non-coding upstream 65183 3942496 ~ 4028558 (-)
G187177 NA non-coding upstream 114659 3991972 ~ 4031442 (-)
LOC107197677 NA other downstream 51208 3778014 ~ 3779720 (-)
G187154 NA other downstream 56085 3765863 ~ 3774843 (-)
G187156 NA other downstream 75251 3749815 ~ 3755677 (-)
G186673 NA other downstream 2440441 1389924 ~ 1390487 (-)
LOC103045965 NA other downstream 3290139 539042 ~ 540789 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other upstream 93621 3970934 ~ 4160954 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 1096915 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1616099 5493412 ~ 5505747 (-)
svbp svbp other upstream 1641480 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 3100338 6977651 ~ 6982840 (-)

Expression


Co-expression Network