park7 (park7,LOC107657982,LOC107701995)


Basic Information

Item Value
gene id park7
gene name park7,LOC107657982,LOC107701995
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4162390 ~ 4171827 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251451.3
ttattttgtttagagaAGCTTCAGCCCACTTCTTTGCTCTGTTCTCTGTAGGGGAGACTGCTCTGCTGAAGCATGGCTGCTAAACGGGCTCTGGTGATTCTGTCGAAGGGCGCAGAGGAGATGGAGACGGTTATACCTGTAGATGTGATGCGGAGAGCTGGGATTGCTGTTACAGTGGCAGGATTAACAGGGAAGGAACCAGTCCAGTGCAGCCGGGACGTCCTTATCTGCCCAGATTCAAGTCTAGAGGAAGCCTCTAAACAGGGTCCGTATGACGTGGTCCTTTTGCCTGGTGGAGCACTTGGTGCCCAGAACCTGTCTGAGTCTCCTGCTGTGAAGGAGGTGTTGAAGGAGCAGGAGGGCAGGAAGGGGCTGATTGCTGCCATCTGTGCAGGTCCTACTGCACTCCTGGCTCATGGCATTGCCTATGGCAGCACAGTCACCACCCACCCTGGTGCTAAGGATAAAATGATGACTGGAGATCACTACAAGTACTCAGAGGCTCGTGTTCAGAAGGATGGCAACCTCATCACCAGCCGGGGTCCAGGCACCAGCTTCGAGTTTGCTCTTACAATAGTAGAGGAGCTGATGGGTGCTGAGGTGGCTGCTCAGGTCAAAGCGCCACTGATTCTGAAAGATTAATCAGGATGCGCTGATTATTAACTTCATCACTGTTGACAAATCCACTGTCAGTCCACTGATGACAAATTCAACTGCTAAACCTTGTTGTCTTTCAGTTTCCCCTCATCTGGAGCTGAATTTGAAAATTTTCTCACAGTTGTTGGCTTcagaaaaaatctaaaaaaggtTTTGATGGAATATTGGAATCAGGTACATGCTAGATGATTCAAGCactttaaatctttatttttgctatgtagaattaaaaaaaaaaaccttgtgtaAATTAATGTGAATGGTCCTGTGTAACAGCATGGCAAATGATGTAATAAAGGCACACACCAGTGTTTAACACATA

Function

symbol description
park7 Predicted to enable several functions, including hydro-lyase activity; peptidase activity; and protein homodimerization activity. Acts upstream of or within response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; male organism; musculature system; and nervous system. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 7; Parkinsonism; cerebral infarction; and middle cerebral artery infarction. Orthologous to human PARK7 (Parkinsonism associated deglycase).

NR:

description
protein deglycase DJ-1zDJ-1-like

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0006954 inflammatory response biological_process
GO:0070301 cellular response to hydrogen peroxide biological_process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity biological_process
GO:0007338 single fertilization biological_process
GO:0006508 proteolysis biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0050821 protein stabilization biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K05687 PARK7; protein DJ-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251451.3 True 979 mRNA 0.47 6 4162390 4171827

Neighbor

gene id symbol gene type direction distance location
LOC107196799 LOC108431625,LOC107706545 coding downstream 245614 3908371 ~ 3916776 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding downstream 255112 3902392 ~ 3907278 (-)
LOC111195357 LOC107706545 coding downstream 260359 3892521 ~ 3902031 (-)
LOC103032581 iffo2,LOC108254735 coding downstream 285077 3830928 ~ 3877313 (-)
aldh4a1 aldh4a1,LOC106582961 coding downstream 340502 3809289 ~ 3821888 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding upstream 57013 4228840 ~ 4303455 (-)
errfi1 LOC108413607 coding upstream 202575 4374402 ~ 4384238 (-)
slc45a1 slc45a1,LOC107654425 coding upstream 366475 4538302 ~ 4559799 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 412433 4584260 ~ 4611730 (-)
LOC103025299 NA coding upstream 638856 4810683 ~ 4824075 (-)
G187177 NA non-coding downstream 130948 3991972 ~ 4031442 (-)
G187172 NA non-coding downstream 133832 3942496 ~ 4028558 (-)
G187168 NA non-coding downstream 275342 3884904 ~ 3887048 (-)
G187167 NA non-coding downstream 279275 3882857 ~ 3883115 (-)
G187166 NA non-coding downstream 279757 3879889 ~ 3882633 (-)
G187198 NA non-coding upstream 27957 4199784 ~ 4200025 (-)
G187247 NA non-coding upstream 147578 4319405 ~ 4319687 (-)
G187248 mrps16,LOC107712960 non-coding upstream 147953 4319780 ~ 4323811 (-)
G187243 NA non-coding upstream 183632 4355459 ~ 4410485 (-)
G187265 NA non-coding upstream 264748 4436575 ~ 4436896 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 1436 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 382670 3778014 ~ 3779720 (-)
G187154 NA other downstream 387547 3765863 ~ 3774843 (-)
G187156 NA other downstream 406713 3749815 ~ 3755677 (-)
G186673 NA other downstream 2771903 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 802401 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1321585 5493412 ~ 5505747 (-)
svbp svbp other upstream 1346966 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2805824 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 3016789 7188616 ~ 7193252 (-)

Expression


Co-expression Network