G187177


Basic Information

Item Value
gene id G187177
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3991972 ~ 4031442 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253814
aagctaagtaaacaaattgtaacaaaaaatacttttttattattattattattttttttttaagtcaaacaagcactggatgttagtGAGTTCTCCGGTGACCCACGGTAGCATGGTAAActcacaggctacagtccaatatactcacctctgaatgaggAATAAGCTGATGCGGTTCGtgcctaatgctaatgctgctccagaagcTCTAGCtgggggttagcagcaggctacaggccgataatactcacctctgaacggggtaatagcagttagcggctaatgctaatactgaatatctaaactgaatctcctgtataactctgtacttcagtggagtgcctttacttctccttaatacctgactgatagaattcatacataaggagcaccggattatagagtgcactgatgatttttgggaaaatttaaggattttaagtgcaccttatagtgtgaaaaatatggtaacttgAATGTTATATAGTAGAttgatcctttttttttcttgatgctGTGTCAGCCCTTTAACCATTTGAACCTGAATCAGTTTGAGGTGAATTTCTGTTGAGTTTTATGtatttagtaatttatttatttacttatttgtcATTTCTAATCCCTGtatagccacacacacacacatccacacacacacacacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253814 True 664 lncRNA 0.37 2 3991972 4031442

Neighbor

gene id symbol gene type direction distance location
LOC107196799 LOC108431625,LOC107706545 coding downstream 75196 3908371 ~ 3916776 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding downstream 84694 3902392 ~ 3907278 (-)
LOC111195357 LOC107706545 coding downstream 89941 3892521 ~ 3902031 (-)
LOC103032581 iffo2,LOC108254735 coding downstream 114659 3830928 ~ 3877313 (-)
aldh4a1 aldh4a1,LOC106582961 coding downstream 170084 3809289 ~ 3821888 (-)
park7 park7,LOC107657982,LOC107701995 coding upstream 130948 4162390 ~ 4171827 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding upstream 197398 4228840 ~ 4303455 (-)
errfi1 LOC108413607 coding upstream 342960 4374402 ~ 4384238 (-)
slc45a1 slc45a1,LOC107654425 coding upstream 506860 4538302 ~ 4559799 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 552818 4584260 ~ 4611730 (-)
G187168 NA non-coding downstream 104924 3884904 ~ 3887048 (-)
G187167 NA non-coding downstream 108857 3882857 ~ 3883115 (-)
G187166 NA non-coding downstream 109339 3879889 ~ 3882633 (-)
G187155 NA non-coding downstream 207631 3757369 ~ 3784341 (-)
G187152 NA non-coding downstream 256039 3732364 ~ 3735933 (-)
G187198 NA non-coding upstream 168342 4199784 ~ 4200025 (-)
G187247 NA non-coding upstream 287963 4319405 ~ 4319687 (-)
G187248 mrps16,LOC107712960 non-coding upstream 288338 4319780 ~ 4323811 (-)
G187243 NA non-coding upstream 324017 4355459 ~ 4410485 (-)
G187265 NA non-coding upstream 405133 4436575 ~ 4436896 (-)
LOC107197677 NA other downstream 212252 3778014 ~ 3779720 (-)
G187154 NA other downstream 217129 3765863 ~ 3774843 (-)
G187156 NA other downstream 236295 3749815 ~ 3755677 (-)
G186673 NA other downstream 2601485 1389924 ~ 1390487 (-)
LOC103045965 NA other downstream 3451183 539042 ~ 540789 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 942786 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1461970 5493412 ~ 5505747 (-)
svbp svbp other upstream 1487351 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2946209 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 3157174 7188616 ~ 7193252 (-)

Expression


Co-expression Network