G187878


Basic Information

Item Value
gene id G187878
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7183826 ~ 7184053 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254800
CTGCAGTAGCTTTGTTTGCCTGCTGTTGTGTttcatacctggcaacccaggggGGCTAATGGGAATGGGATCAGAGGTTAAACACAAACAGATTTCCACTCTGTAATGGACAATTAAAGAAGACATATaagctgaagctctgctgtaaAGAGATGCTAGTGCTTAGCTAAAAATTAGCTcgtattttttatatctcattcgacatattgattattttatgaGTTAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254800 True 228 lncRNA 0.39 1 7183826 7184053

Neighbor

gene id symbol gene type direction distance location
hp1bp3 hp1bp3 coding downstream 117740 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 133525 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 152799 7007447 ~ 7031027 (-)
sox13 sox13 coding downstream 234872 6897991 ~ 6948954 (-)
LOC103022878 NA coding downstream 355115 6812408 ~ 6828711 (-)
LOC103037403 NA coding upstream 13147 7197200 ~ 7205391 (-)
LOC103036072 phactr3,LOC108254891 coding upstream 45420 7229473 ~ 7343221 (-)
LOC103035242 NA coding upstream 192506 7376559 ~ 7378591 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 250091 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 937684 8121737 ~ 8139529 (-)
G187875 NA non-coding downstream 28477 7153083 ~ 7155349 (-)
LOC111195364 NA non-coding downstream 53047 7106200 ~ 7130779 (-)
G187794 NA non-coding downstream 185967 6990964 ~ 6997859 (-)
G187787 NA non-coding downstream 297729 6885187 ~ 6886097 (-)
G187766 NA non-coding downstream 382378 6775168 ~ 6801448 (-)
G187880 NA non-coding upstream 3737 7187790 ~ 7188038 (-)
G187881 NA non-coding upstream 4025 7188078 ~ 7188452 (-)
G187928 NA non-coding upstream 47069 7231122 ~ 7231844 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding upstream 165958 7350011 ~ 7353303 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding upstream 170194 7354247 ~ 7361214 (-)
LOC111195363 snrpe other downstream 200986 6977651 ~ 6982840 (-)
svbp svbp other downstream 1660905 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1678079 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2194568 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 3022872 3970934 ~ 4160954 (-)
pdrg1 pdrg1 other upstream 4563 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 204344 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 225069 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2767031 9951084 ~ 9956317 (-)
G188898 NA other upstream 3806764 10990817 ~ 10991394 (-)

Expression


Co-expression Network